Silvanigrella aquatica: AXG55_11640
Help
Entry
AXG55_11640 CDS
T09772
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
saqi
Silvanigrella aquatica
Pathway
saqi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
saqi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AXG55_11640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
saqi03021
]
AXG55_11640
03019 Messenger RNA biogenesis [BR:
saqi03019
]
AXG55_11640
Transcription machinery [BR:
saqi03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AXG55_11640
Messenger RNA biogenesis [BR:
saqi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AXG55_11640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
OB_RNB
AAA_22
ATPase_2
S1CSD-TOTE-2
AAA
DnaB_C
Motif
Other DBs
NCBI-ProteinID:
APJ05172
UniProt:
A0A1L4D4R4
LinkDB
All DBs
Position
complement(2719061..2720308)
Genome browser
AA seq
415 aa
AA seq
DB search
MNLKELKEKHISDLVHMAKEMGIDGAANLRKQDLVFSLLEAQAVRNGVVYSEGVLETLPD
GFGFLRAPDYNYLPGPDDIYVSPSQIRRFNLRTGDTVSGQIRPPKDNERYFALLKVESVN
GETPDFTGEKILFDNLTTIHPDFRFKLEIDPQIYSTRLIDLFAPIGKGQRALIVAPPKTG
KTILLQNIANSIAQNHPEAVLIVLLIDERPEEVTDMERSVRGEVVSSTFDEPAQRHVQVA
EMVIEKAKRLVEHKKDVVILLDSITRLARAYNSVVPPSGKILTGGVDANALHKPKRFFGA
ARNVEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNMELVLDRRLAERRVFPAIDINKS
ATRREDLLLARETLNRLWVLRKVLHPMSPIESMEFLLQRFERSETNDDFLNSMNG
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgaacttaaaagagcttaaagaaaaacatattagcgatttagttcatatggctaaggaa
atgggcattgatggcgcagcaaacttaagaaaacaggatcttgttttctcacttctagag
gctcaagctgtccgcaatggtgtggtttattctgaaggtgttcttgaaaccttgccggat
ggttttgggtttttaagagctcccgactacaattatttgcctgggcctgatgatatctat
gtttctccatcgcaaattcgtcgttttaatttacgtacaggcgatacggtatcaggacaa
attcgtccaccaaaggataatgaacgttactttgcgttgttaaaagtagaatctgtaaat
ggggaaactcccgactttacaggtgaaaaaatattatttgataacttaacaacaattcac
cccgatttccgttttaaattagaaatcgatccgcaaatttacagcacacgtctaatcgac
ctttttgctcctattggaaaagggcagcgtgctcttattgtggcgcctcctaaaacaggt
aaaacaattttgctgcaaaatattgcgaattctattgcgcaaaatcaccctgaagctgtg
cttattgtacttcttattgacgagcgtcccgaggaagttaccgatatggaacgctctgtc
cgtggtgaagtcgtgagcagtaccttcgatgagcctgctcaacgtcacgtacaagtcgct
gaaatggttattgaaaaagcaaaaaggttggttgagcacaaaaaagatgtggtcattttg
ctcgactctatcactcgtcttgcgcgcgcttacaacagcgtcgttcctccgagcggtaaa
atattaaccggtggtgtggatgccaatgctcttcataaaccaaagcgtttctttggtgcc
gcacgtaatgtggaagaaggcggaagcttaaccattattgcaacagctcttatcgatacc
ggaagccgtatggacgaagttatttttgaagagttcaagggcacaggtaacatggaactc
gttctcgatcgccgcttggcagaacgccgtgtgttccctgctattgacatcaataagagt
gctacgcgtcgtgaagatcttcttttggctcgcgaaactctcaatcgtctttgggtactc
cgcaaggtgcttcaccctatgtcgcctattgagtctatggaattcttgctccagcgtttt
gaacgctccgaaaccaatgatgactttttaaatagtatgaatggttaa
DBGET
integrated database retrieval system
