Sulfurimonas aquatica: GJV85_09915
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Entry
GJV85_09915 CDS
T08902
Name
(GenBank) RNB domain-containing ribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
saqt
Sulfurimonas aquatica
Pathway
saqt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
saqt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GJV85_09915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
saqt03019
]
GJV85_09915
03016 Transfer RNA biogenesis [BR:
saqt03016
]
GJV85_09915
Enzymes [BR:
saqt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
GJV85_09915
Messenger RNA biogenesis [BR:
saqt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GJV85_09915
Transfer RNA biogenesis [BR:
saqt03016
]
Prokaryotic type
tRNA degradation factors
GJV85_09915
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNR_2nd
OB_RNR_1st
CSD2
Motif
Other DBs
NCBI-ProteinID:
QSZ42409
UniProt:
A0A975B1A7
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All DBs
Position
2086102..2088042
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AA seq
646 aa
AA seq
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MKSLLIRLTLGLSEQDITVDEMKHVQNWMAKKYLTKKENIYKFNSKFRAGTLGLVQKDTA
YLNVIGENIRDLFIGEGDLGEAKEGDLIIAQRLLGKRGTPSAKIAEIVGREQSYSIAYII
QKDSHLSLVDLKTEYPIGAELTPDELNFYNVGDVFKIDNQENKVLEKLGNIKDPKVDEKI
VLAQYNKHDEFDEEVLKIAESFEPVNASKYPKRKDLRELHFCTIDPVTAKDYDDAICWDD
KNSTLYVAIADVSEYIKPFGALDNEAIYRSFSIYLPHRSIPMLPRQLSETLCSLQPHVDR
LAYVFEMKLNLDTLEVASSSVYEAIIHSKRRFNYEEIDSFFEGDLKAQNSDEEIIFNALT
KLRVVTDALKAKRLKVGYDFRSTEIDMTIDEDSNLVSTHEAQETPSHALIEDCMLLANKE
AASSFERGIFRIHEPPSQAKLQILYQELAGVGMQIEIKKSIKETISDIQRQAREMDIESE
VDTLIIRSQMQARYAPLNSGHFGLGFEQYTHFTSPIRRYSDLIVHRLLKAINAGDTQEGS
YVLRNIEALSMTISEKEREASSIENEFMARKYARWANENIGNEYKARITATEVEIKAELH
DEIQGARFLITSNSDVVLFEDVIVKIEKVDIARAKIYAIVVGKVDV
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatctctacttattaggcttactcttggtttaagtgagcaagatatcacagttgat
gaaatgaaacatgttcaaaactggatggctaaaaaatacctcacaaaaaaagaaaatatc
tataaatttaattccaagtttcgtgcaggcacacttggtctagttcaaaaagatacagca
tacttaaatgttataggtgaaaatatccgtgaccttttcattggtgagggagatctaggc
gaggcaaaagagggtgacctcatcattgcacagcgcttacttggaaagcggggaactcca
tctgctaaaatcgctgaaatagttggacgcgagcagagttatagtattgcctacattatt
caaaaagattctcacctctctttagttgatctaaaaacagagtatccaatcggtgcagaa
ctgacacctgatgaattaaatttttacaatgttggagatgtttttaagatagacaaccaa
gagaataaagtcttagaaaaactaggaaatattaaagaccctaaagttgatgaaaagata
gttctcgcacaatacaacaagcatgatgagtttgatgaagaggttttaaaaatagcagaa
tcattcgagccagtcaatgcaagtaaatatcctaaacgcaaggacttaagagagcttcac
ttttgtactattgaccctgttactgcaaaagattatgatgatgcaatatgctgggatgat
aaaaacagtactctttatgtggctatagcggatgtaagtgagtatataaaaccctttggt
gcacttgataatgaagccatctatagaagtttttctatctaccttcctcatcgttccatt
ccaatgcttcctcgccaactaagtgagacactttgttctttgcagcctcatgtagataga
ctcgcttatgtttttgagatgaagctcaacctagatactcttgaagtagcttcctcatcc
gtttatgaagctataatccactctaaacgcaggtttaattatgaggagatagatagcttt
tttgagggtgatttaaaggctcaaaatagcgatgaagagataatctttaatgcacttaca
aaactacgagttgtaactgatgcactaaaagctaagcgtttaaaagtgggttatgacttt
aggtcaactgagattgatatgacaatagatgaagattcaaacttagtctcaactcatgag
gcccaagagactccatcgcatgctcttatagaagactgtatgcttttagcaaataaagag
gcagcttcttcatttgagagaggaatatttagaattcacgaacctccaagtcaggcaaaa
ctacaaatactttaccaagaactcgctggagttggtatgcaaatagagattaagaagtct
atcaaagagacaatctctgacattcagagacaggctcgtgagatggatatagagtctgaa
gtagatactctcataatccgctcacaaatgcaggcaagatatgcgccactaaactctgga
cactttggacttgggtttgagcagtatactcactttacttcacctattaggcgttattct
gacctgatagtacatagacttcttaaagctataaatgcaggtgatacacaagaaggctct
tatgtactacgtaatattgaagcacttagtatgaccatcagtgaaaaagagagagaagcg
agcagtatagaaaatgagtttatggcaaggaaatacgctcgttgggcaaatgaaaacatt
ggcaatgagtataaagcacgtataactgcaacagaagtagaaataaaagcagaacttcat
gatgagattcaaggggctcgctttttgataacttcaaacagtgatgttgttctttttgaa
gatgtcatagtaaaaatagaaaaagtagatattgctcgagcaaaaatatatgccattgta
gttgggaaagtggatgtataa
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