Sorex araneus (European shrew): 101537038
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Entry
101537038 CDS
T07854
Symbol
COL25A1
Name
(RefSeq) collagen alpha-1(XXV) chain
KO
K24356
collagen type XXV alpha
Organism
sara
Sorex araneus (European shrew)
Pathway
sara04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
sara00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
101537038 (COL25A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sara00536
]
101537038 (COL25A1)
Glycosaminoglycan binding proteins [BR:
sara00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101537038 (COL25A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
101537038
NCBI-ProteinID:
XP_012789119
LinkDB
All DBs
Position
Unknown
AA seq
625 aa
AA seq
DB search
MLGKKPAGKGAAREPGAHTPGPAGPRCARALPPCAALAALLAAVAVLSCLYLGVKTNDLQ
ARIAVLEAAKGDPAFRVPPAAYLDELKAMVHEKVEQLLAQKSYEHMAKVRIAREAPSACN
CPAGPPGKRGKRGRRGESGPPGQPGPQGPPGMKGDKGEQGDQGPRGLPGFPTVAALHSNQ
ILTVKGDQGQAGPPGPPGPPGPRGPPGDTGKDGPRGMPGVPGEPGKPGEQGIMGPVGPPG
QKGSVGAPGLQGLNGQKGDAGLPGAEGQGGIPGLKGEPGERGEKGDAGESGPKGDPGAKG
DPGSSAAGIKGEPGESGRPGQKGEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGTKGE
RGALGPPGRGERGEPGVPGPKGERGDKGDSGALGPRGPPGQKGDQGATEIIDYNGNLQEA
LQGPPGPPGPQGLQGPKGEPGSPGTPGADGEQGLKGSKGDVGDPGVPGEKGGIGLPGLPG
ANGMKGEKGDSGLPGPQGPSIIGPPGPPGPHGPPGPMGPHGLPGPKGEPGLNGVKGLKGD
PGQKGDRGPLGLPGASGLDGKPGSRGTDGPMGPHGPAGPKGERGEKGAAGEPGPRGPYGL
PGFPGPRGEKGDLGEKGEKVTPRRA
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgctggggaagaagcccgcggggaaaggggcggcccgcgagccgggcgcgcacaccccg
ggccccgccggcccgcgctgcgcccgcgcgctgcccccctgcgcggccctggccgccctc
ctggccgcggtggccgtgctgtcctgcttgtacctgggggtgaagaccaacgacctgcag
gcgaggatcgccgtcctcgaagcggccaaaggcgaccctgccttccgcgtgccgcccgcc
gcctacctggacgagctgaaggcgatggtgcacgagaaggtggagcagcttctggctcag
aaatcctatgaacatatggctaaagtcaggatcgccagagaagcgccttccgcatgcaac
tgcccggcaggacctcctgggaaacgaggcaaaaggggtcggagaggagagtctggtcct
cctggtcagcccggtccccagggccctcccggcatgaaaggtgacaagggagaacaaggt
gatcagggacctcggggtctgccaggcttccccacggtcgccgctctgcacagtaatcag
atcctcaccgtcaagggtgaccaaggacaggccggccccccaggaccccccggccctcca
ggccccaggggccctcccggggacacggggaaggacggcccccgaggaatgcctggtgtg
cccggcgagccagggaaaccaggagaacaaggcataatgggaccagtgggccctcctgga
caaaagggttctgttggagcacctggacttcaagggctgaatgggcaaaagggtgatgct
gggttgcccggagcagaaggacagggtggaattcctgggctaaaaggagaacctggagaa
agaggcgaaaagggagatgctggagagagcggccccaaaggagacccgggtgcaaagggc
gaccctggatcctctgctgcaggaattaagggtgaacccggagaatctggtcggccaggg
caaaagggtgaacccgggcttcctgggcttcctggacttccggggataaagggagaaccc
ggtttcattggtccccaaggagaaccaggcttaccaggcttgccaggaacaaagggtgag
cgtggggcgctggggcccccaggaagaggagagcgcggagagcctggcgtcccgggaccc
aagggtgaacgaggtgacaaaggtgactcaggagcgctgggaccaaggggtcctcccgga
cagaagggggaccaaggcgccacggagatcatcgactacaacggcaacctccaggaagcc
ttgcaggggccccctggaccacccggaccccaaggactacaaggaccaaagggagagccc
ggatctccaggaacccccggagctgatggagagcagggactcaaaggatccaaaggagat
gtgggggacccaggcgtgcccggggagaaaggcgggatcggactgcccgggttaccgggc
gccaacgggatgaagggagagaaaggagactcgggactgcctggtcctcaaggcccttct
atcatcggacccccaggacctccgggcccccatggccccccgggacccatgggaccccac
ggacttcccgggccaaagggtgaaccagggttaaatggtgttaaaggattgaagggtgac
ccgggtcaaaagggtgacagaggaccccttggtcttccaggagcatctggcttagacggg
aagccaggatcccggggtacagatggccctatgggaccccatggccctgcaggtcccaaa
ggagaacgaggtgaaaagggagcagcgggcgagccgggacccagaggcccctacggcctg
cctggtttcccgggtccacgaggcgagaagggcgatctaggagagaagggagagaaggtg
acaccccgccgtgcctaa
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