Sorex araneus (European shrew): 101538637 Help Entry 101538637         CDS       T07854                                  Symbol COL2A1 Name (RefSeq) collagen alpha-1(II) chain   KO K19719   collagen type II alpha Organism sara  Sorex araneus (European shrew) Pathway sara04151   PI3K-Akt signaling pathway sara04510   Focal adhesion sara04512   ECM-receptor interaction sara04518   Integrin signaling sara04974   Protein digestion and absorption sara05165   Human papillomavirus infection Brite KEGG Orthology (KO) [BR:sara00001]  09130 Environmental Information Processing   09132 Signal transduction    04151 PI3K-Akt signaling pathway     101538637 (COL2A1)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     101538637 (COL2A1)    04518 Integrin signaling     101538637 (COL2A1)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     101538637 (COL2A1)  09150 Organismal Systems   09154 Digestive system    04974 Protein digestion and absorption     101538637 (COL2A1)  09160 Human Diseases   09172 Infectious disease: viral    05165 Human papillomavirus infection     101538637 (COL2A1)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:sara00536]     101538637 (COL2A1) Glycosaminoglycan binding proteins [BR:sara00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    101538637 (COL2A1) SSDB OrthologParalogGFIT Motif Pfam:  Collagen COLFI VWC VWC2L_2nd Motif Other DBs NCBI-GeneID:  101538637 NCBI-ProteinID:  XP_004610486 LinkDB All DBs Position Unknown AA seq 1487 aa AA seqDB search MARLGAPQTWVLLTLLAAAVLRCQGQDAQEAGSCVQNGQRYNDKDVWKPEPCRICVCDTG TVLCDDIICEDVKDCLSTEIPFGECCPICPTDLSTASGQPGPKGQKGEPGDIKDIVGPKG PPGPQGPAGEQGPRGDRGDKGEKGPPGPRGRDGEPGTPGNPGPPGPPGLPGPPGLGGNFA AQMAGGFEEKAGGAQMGVMQGPMGPMGPRGPPGPAGSPGPQGFQGNPGEPGEPGVSGPMG PRGPPGSPGKPGDDGEAGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKG EAGAPGVKGESGAPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVG PAGGPGFPGAPGAKGEAGPTGARGPEGAQGSRGEPGTPGSPGPAGASGNPGADGIPGAKG SAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQG APGPAGEEGKRGARGEPGGAGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAG PKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKIGPSGAPGEDGRPGPPGPQGARGQPG VMGFPGPKGANGEPGKAGEKGLAGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPG PSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGGRG LPGTPGTDGPKGAPGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPG KDGGRGLTGPIGPPGPAGANGEKGEAGPPGPSGTAGARGAPGERGETGPPGPAGFAGPPG ADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPG AAGRVGPPGSNGNPGPPGPPGPSGKDGPKGVRGDSGPAGRAGEPGLQGPAGAPGEKGEPG DDGPPGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGSSGDRGPPG PVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGPLGAPGAPGPPGSPGPSG PTGKQGDRGEAGAQGPMGPAGPAGARGIPGPQGPRGDKGEAGEAGERGLKGHRGFTGLQG LPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGSNGIPGPIGPPGPRGRSGETGPAG PPGNPGPPGPPGPPGPGIDMSAFAGLGQREKGPDPMQYMRADQAAGSLRQHDAEVDATLK SLNNQIESIRSPEGSRKNPARTCQDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETG ETCVYPSPATVPKKNWWSSRNKEKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRL LSTEGSQNITYHCKNSIAYMDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTVLRDGCTK HTGKWGKTVIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCFL NT seq 4464 nt NT seq  +upstreamnt  +downstreamnt atggcccgcctcggggccccccagacgtgggtgctgctgacgctgctcgccgccgccgtc ctgcggtgtcagggccaggatgcccaggaggctggcagctgcgtgcagaacgggcagagg tataatgataaggatgtctggaagcccgagccctgccggatctgtgtctgtgacactggg accgtcctctgcgacgacataatctgtgaagatgtgaaagactgtctcagcactgagatc cccttcggagagtgctgccccatctgcccgactgacctctccactgccagtgggcaacca ggaccaaagggccagaaaggagaacctggagatatcaaggatattgtaggacccaaagga ccccctgggccacagggacctgcaggtgaacaaggacctagaggtgatcgtggtgacaaa ggcgaaaaaggtccacctggacctcggggcagagatggagagcctgggacccctggaaac cctggcccccctggccctcctggcctccccggtccccccggcctcggtgggaactttgct gcccagatggctggaggatttgaagagaaggctggtggtgcccagatgggagtaatgcaa ggaccaatgggccccatgggacctcgaggaccaccaggccctgctggctctcccggtcct caaggatttcaaggcaaccctggggagcccggggaacccggagtctctggtcccatggga ccacgcggtcctcctggttctccaggaaagcctggtgacgatggtgaagccggaaagcct gggaaatctggtgaaaggggccctccaggtcctcagggtgctcgcggcttccccggaact ccaggccttcctggtgtcaaaggtcaccgaggctacccaggcctggatggtgctaaagga gaagctggagcccccggtgtgaagggtgagagtggcgcccctggggagaacggttctcca ggccccatgggtcctcgaggcctgcctggtgagaggggacggactggccccgccggcgct gcgggtgcgaggggcaacgacggtcagcctggccccgccgggcctccgggtcccgtgggt ccagccggtggtcctggcttccctggtgcccccggagccaagggcgaagctggtcccact ggcgctcgtgggcctgaaggcgctcaaggttctcgcggggaacctggcacccccgggtcc ccggggccggccggggcttcggggaaccctggagcagatgggattcctggcgccaaaggc tcagctggtgctcctggcattgctggtgctcccggctttcctggaccccgcggacccccc ggccctcaaggtgcaactggtcctttgggccccaaaggccagacgggtgaacccggcatc gctggcttcaaaggcgagcaaggccccaagggcgagcctggtcctgcaggcccccaagga gcccctggcccagctggcgaagaaggaaagagaggtgctcggggcgagcctgggggtgcc ggtcctattggcccccctggagagagaggtgctcctggcaaccgaggcttcccagggcag gacggtctggccgggcccaagggagcccccggagagcggggacccagcggccttgctggc cccaagggcgccaacggtgaccccggccgccccggagagcccggccttcctggggcccgg ggtctcactggccgccctggcgatgctggtcctcaaggcaaaatcggcccttccggagcc cccggtgaagatggccgccctgggcctccgggtcctcagggggctcgcggacagcctggt gtcatgggtttccccggccccaaaggtgctaatggtgagcctggcaaagctggcgagaag gggctggctggtgctcctggcctgaggggtcttcccggcaaagatggagagacgggtgct gctggcccccccggacccgctggtcccgctggtgaacgaggcgagcagggcgctcctggg ccgtccgggttccagggactgcccgggcctcccggtccccccggtgaaggtgggaagcca ggcgaccagggcgttcccggtgaagctggagcccccggcctcgtgggcccccggggcgaa cgcgggttcccaggcgagcgcggctcccccggcgcccagggcctccagggcggccgaggc ctccccggcactcccggcactgacggccccaaaggtgcacctggccccgcggggcccccc ggcgctcagggccccccaggcctgcagggcatgcccggagagagaggcgccgctggcatc gctgggcccaagggagacaggggcgatgtcggtgagaaaggcccagagggcgcccccggg aaggacggcgggcgaggtctgaccggccccatcgggcccccgggtcctgcgggtgccaac ggcgagaagggagaagccgggcctccgggtccttccgggacggctggtgcccgaggcgcc ccgggtgagcgtggcgagaccggaccccctggacctgctggcttcgccggccctcccggc gctgatggccagccaggagccaagggcgagcagggagaggccggccagaagggtgacgcc ggggccccgggtcctcagggtccctccggagctcccgggcctcagggccctactggtgtg actggtcccaaaggagcccgcggtgcccagggtcccccgggagctaccggcttccccgga gctgctggccgcgtgggccccccaggctcgaacggaaaccctggaccccctggccctcct ggtccttctggaaaagacggtcccaaaggtgttcgaggggacagtggccctgcgggccgc gctggcgagcccggtctgcaaggccctgccggagcccctggcgagaagggagagcctgga gacgacggccccccgggtcccgatggccccccaggcccccagggtctggctgggcagagg ggcatcgtgggtctgcctggacagcgtggggagagaggcttccccggcctgcccggccca tcgggtgagcctggcaagcagggagctcccgggtcatctggagaccgcggtccccccggc cccgtgggcccgcctggcctgaccggtcctgcgggagagcctggacgagagggaagccct ggcgctgatggccccccgggcagagacggcgcagctggagtgaagggtgatcgtggtgag actggtcccttgggagcccccggagcccctgggccccccggctctcccggcccctctggc cccaccggcaaacagggagaccgaggagaagcgggcgcacaaggccccatgggccccgca ggacccgccggagcccggggaatccccggccctcaaggtccccgaggtgacaaaggagaa gcaggagaggctggcgagaggggtctcaagggacaccgtggcttcacggggctgcagggg ctgcctggcccccctggtccttccggagaccaaggcgcttccggtcctgccggtccttct ggcccgagaggaccaccaggccccgtggggccctccggcaaagatggatctaacggcatc ccaggccccatcggacctcccggcccccgtggacgctcaggagaaactggccccgctggt cctcctggaaatcccggccccccaggccctcctggcccccccggacctggcatcgatatg tctgccttcgctggcctaggccagagggagaagggccccgaccccatgcagtacatgcgg gcggaccaggcagccggcagcctcaggcagcacgacgccgaggtggacgccacactcaag tccctcaacaaccagatcgagagcatccgcagccccgagggctcccgcaagaaccctgct cgcacctgccaggacctgaaactctgccacccagagtggaagagcggagattactggatc gaccccaaccagggctgcacgttggatgccatgaaggttttctgcaacatggagactggt gagacctgcgtctaccccagccctgccactgttcccaagaagaactggtggagcagcagg aacaaggagaagaagcacatctggttcggagagaccatcaacggcggcttccacttcagc tacggcgatgacaacctggctcccaacaccgccaacgtccagatgaccttcttgcgcctg ctgtccaccgagggctcccagaacatcacctaccactgcaagaacagcatcgcctacatg gacgaggccgccggcaacctcaagaaggccctgctcatccagggctccaatgacgtggag atccgggccgagggcaacagcaggttcacgtacactgtcctgagggatggctgcacgaaa cacaccggtaagtggggcaaaacggtcatcgagtaccggtcacagaagacatcccgcctc cccatcattgacattgcgcccatggacatcggagggcccgagcaggaatttggtgtggac atagggcctgtctgcttcttgtaa

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