Sorex araneus (European shrew): 101539602
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Entry
101539602 CDS
T07854
Symbol
DDX55
Name
(RefSeq) ATP-dependent RNA helicase DDX55
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
sara
Sorex araneus (European shrew)
Brite
KEGG Orthology (KO) [BR:
sara00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sara03009
]
101539602 (DDX55)
Enzymes [BR:
sara01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101539602 (DDX55)
Ribosome biogenesis [BR:
sara03009
]
Eukaryotic type
Pre-60S particles
Helicases
101539602 (DDX55)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
EMP24_GP25L
CTE_SPB4
CTT_SPB4
Helicase_C_2
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
101539602
NCBI-ProteinID:
XP_004611201
LinkDB
All DBs
Position
Unknown
AA seq
875 aa
AA seq
DB search
MVVTFCPCHEDVTCSRGPDQSQSTAIRTRSWQAVTRGCSLSPGLGTQELLSPVFGGDQPQ
ASTVVVLVITGPDNNGIYKGDRESSGKYTFAAHMDGTYRFCFSNRMSTMTPKIVMFTIDI
GEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRARDEAQTAAGRQS
GGLAPACHGRPGTQAAGRAQHSQATGLRSVGARFGFSAFKGGKTLAFVIPVLEILLRREE
QLRKGQVGAIIITPTRELATQIHEVLAHFTKPFPQLSQILWIGGTNPAEDVARFKEHGGH
IVVATPGRLEDMFRRKAEGLDLASCVRSLEVLVLDEADRLLDMGFEASINTILELLPRQR
RTGLFSATQTQEVENLVRAGLRNPVRISVKEKGVAASSTQKTPSRLDNYYMVCKAHEKFN
QLVHFLRNHKREKHLVFFSTCACVEYYGKALEGLVKNVRILCIHGKMKYRRNKIFMEFRQ
LQSGILVCTDVMARGIDIPEVNWVLQYDPPSSASAFVHRCGRTARIGHRGSALVFLLPME
ESYVSFLAINQKCPLQEMAQQQHPADVLPKLQAMARTDRAVFEKGMRAFVSFVQAYAKHE
CGLIFRLKDLDLASLARGFALLRMPRMPELRGKQFPDFVPVDIDTDTIPFKDKAREKQRQ
KLLQQQREKTETEGKRKFIKNKAWSKQKAKKEKRKKINKKRNREEGSDMDEEDMEELLND
TRLLKKFKKGKITEAEFEKGLLSGGKGGRVPVGCGASDLECTGDVLRYFGKCTVPGKLLH
GAQTGALQDAGSECHGACCVQMQSGRIGKRPPQARVSSDASDKAVQSSGSGGAYSSFVNQ
ASPEMSVSGNREHGSALRAAMNTLADDEQNSPELL
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atggttgtgaccttctgcccatgtcatgaggatgtcacctgctcccgaggcccggatcag
agccagagcactgctatcaggactcgcagctggcaggcagttactcggggctgtagcttg
agcccgggtcttggcacccaggagcttctctccccggtgttcggtggtgaccagccacag
gcgtccacggtggtggtgctggtgatcacggggccagataataatggaatttacaaagga
gaccgggagtccagtgggaagtacacattcgctgctcacatggacgggacgtacaggttc
tgcttcagcaacaggatgtccaccatgactcccaaaatagtgatgttcaccatcgacatc
ggggaagcccccaaaggccaggacatggagacggaagctcaccagaacaaactggaagaa
atgatcaatgagctggcggtggccatgacggccgtgaagcacgagcaagagtacatggag
gtgcgggagaggatccacagagcgagagatgaggcgcagacagccgcaggccggcagagt
ggaggccttgcccccgcgtgccacgggcgtcccggcacccaggcagcaggaagggcccag
cactcccaggccactggcctgcggtcagtgggggcgcgcttcggcttctcagcctttaag
ggcggcaagacgctggccttcgtcatccccgtcctggagatcctcctgcggcgggaggag
cagctgaggaagggccaggtgggggccatcatcatcacgcccacgcgggagctggccacg
cagatccatgaggtcctggcacacttcaccaagcccttcccgcagctcagccagatcctc
tggattggaggcaccaaccctgcagaggacgtggccaggttcaaggagcatgggggccac
atcgtggtggccaccccgggccgcctggaggacatgttccgcaggaaggctgagggcctg
gacctggccagctgcgtgcggtccctggaggtgctggtgctggatgaggccgacaggctc
ctggacatgggcttcgaggcgagcataaacaccatcctggagctgctgcccaggcagagg
agaacgggccttttctcggccacgcagacgcaggaggtggagaacctggtgcgtgccggg
ctccggaaccccgtccgcatctcggtgaaggagaagggcgtggcggccagcagcacccag
aaaaccccgtcccgcctggacaactactacatggtctgcaaggcacatgagaaatttaat
cagttggtacactttcttcgaaatcataagcgggaaaaacacctggtcttcttcagcacc
tgcgcgtgtgtcgagtactacgggaaggccctggaggggctggtgaagaatgtgcggatc
ctgtgcatccacgggaagatgaagtacaggcgcaacaagatcttcatggagttccgccag
ctgcagagtgggattctcgtgtgcacggacgtgatggcccggggcatcgatattcctgag
gtgaactgggttctgcagtacgacccccccagcagtgccagcgcctttgtgcatcgctgt
ggccgcacggcccgcatcggccacagaggcagcgcgctggtgttcctcctccccatggaa
gagtcctacgtcagcttcctggccatcaaccaaaagtgtcccctgcaggagatggcgcag
cagcagcacccggccgacgtccttccaaagctgcaggccatggcgcgcacggacagggcc
gtgttcgagaagggcatgagggccttcgtgtccttcgtgcaggcctacgcgaagcacgag
tgtggcctcatcttccggctgaaggatctcgacttggccagtcttgcccgcggcttcgcc
ctgctcaggatgcccaggatgccagagctgagggggaagcagttccctgacttcgtgccc
gtggacattgacacagacaccatccccttcaaagacaaagccagagagaagcagaggcag
aagctgttgcaacagcagagagagaaaacagaaaccgaagggaaaagaaaattcatcaaa
aataaagcatggtcgaaacagaaggccaagaaggaaaagaggaaaaaaataaacaagaaa
aggaaccgggaggagggctcggacatggacgaggaggacatggaggaacttctgaacgac
acaaggctcttgaagaagttcaagaaaggcaaaatcacagaggcagagttcgagaagggt
ttgctgagtggtggcaaaggcggccgcgtgcctgtgggctgcggggcctcagacttggag
tgcacaggcgacgtcctcagatactttggaaagtgcaccgtcccggggaagctgctccat
ggagcacagacgggagccctgcaggacgctggaagcgagtgccatggtgcctgctgtgtc
cagatgcagagtggccgcatcgggaaacggcctcctcaggcgcgcgtctcctctgatgct
tctgacaaagcagtccagagctcgggaagtgggggggcgtactcgtcattcgtgaaccag
gcgagtcctgaaatgtcagtttctggaaaccgtgagcacggttcagctttaagggcagcc
atgaacacactcgcagacgatgaacagaactctcctgaactgctgtaa
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