Sorex araneus (European shrew): 101540191 Help Entry 101540191         CDS       T07854                                  Symbol XRN1 Name (RefSeq) 5'-3' exoribonuclease 1   KO K12618   5'-3' exoribonuclease 1 [EC:3.1.13.-] Organism sara  Sorex araneus (European shrew) Pathway sara03008   Ribosome biogenesis in eukaryotes sara03018   RNA degradation Brite KEGG Orthology (KO) [BR:sara00001]  09120 Genetic Information Processing   09122 Translation    03008 Ribosome biogenesis in eukaryotes     101540191 (XRN1)   09123 Folding, sorting and degradation    03018 RNA degradation     101540191 (XRN1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:sara03019]     101540191 (XRN1)    03009 Ribosome biogenesis [BR:sara03009]     101540191 (XRN1)    03016 Transfer RNA biogenesis [BR:sara03016]     101540191 (XRN1)    03036 Chromosome and associated proteins [BR:sara03036]     101540191 (XRN1) Messenger RNA biogenesis [BR:sara03019]  Eukaryotic type   mRNA surveillance and transport factors    mRNA cycle factors     Common to processing body (P body) and stress granule      101540191 (XRN1)   mRNA degradation factors    5'-3' decay     5' exonucleases      101540191 (XRN1) Ribosome biogenesis [BR:sara03009]  Eukaryotic type   Pre-60S particles    RNases     101540191 (XRN1) Transfer RNA biogenesis [BR:sara03016]  Eukaryotic type   tRNA degradation factors    Rapid tRNA decay (RTD) pathway factors     101540191 (XRN1) Chromosome and associated proteins [BR:sara03036]  Eukaryotic type   Gene silencing    piRNA pathway     101540191 (XRN1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  XRN_M XRN_N XRN1_D2_D3 XRN1_D1 SH3_12 Dicer_dimer Motif Other DBs NCBI-GeneID:  101540191 NCBI-ProteinID:  XP_012791628 LinkDB All DBs Position Unknown AA seq 1658 aa AA seqDB search MNGIIHQCSHPNDDDVHFRISDDKIFADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMN QQRGRRFRSAKEAEDKIKKAVEKGETLPTEARFDSNCITPGTEFMARLHEHLKYFVNLKI STDKSWQGVTIYFSGHETPGEGEHKIMEFIRSQKAKPDHDPNTRHCLYGLDADLIMLGLT SHEAHFSLLREEVRFGGKKTQRICAPEETTFHLLHLSLMREYIDYEFSSLKDKITFKYDI ERIIDDWILMGFLVGNDFIPHLPHLHINHDALPLLYGTYISVLPELGGYINESGHLNLPR FEKYLVKLSDFDREHFSEVFVDLKWFESKVGNKYLNEAAGAAAEEALNYKEKKKSKDREN LCWAALDKNEEMAASKDNLEDEPEDDDLFETEFRQYKRTYYMAKMGVDVVSDDFLAAQAA CYVQAIQWVLHYYYHGVQSWSWFYPYHYAPFLSDIRNISALQIQFELGKPFKPFEQLLAV LPAASKSLLPECYQHLMTSEDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEA METCNHSLKKEERKRNQHSECLMCWYDGDADFPYASPWPEKFPTIERCRARYKIISLDAW RVDISKNRITKVDQKALYFCGFPTLKHIKHKFFLKKSGVQVFQQSSRGENMMLEILVDPD SEDVSVENVASSILGKSVFVNWPHLEEARVVGVSDGETKFYLEEPPGTQKLYLGRAVPPS KVVHLGDKEQSNWSKEVQGISEHYLRRKGIIINETPAVVYAQLLAGRKYQISPNGDVHLE KQWSKQVLPFVFQTIVKDICAFDSRFSNIRTLGDLFPPGSVVFMLGAPYYGCTGEVQDSG DVIPEGRIRVLFSIPCEPALDTLVQNQHKYSIKYNPGYVLASRLGVSGYLVSRFTGSIFI GRGSRRNPHGDHKANVGLNLKFNKKNEEVPGYTKRVGSEWMYSPAAEQLLADYLERAPEL FSYIAKNSQEDVFYEDDIWPGENENGAEKVQEIITWLKGHPVSTLPRSSCDLQILDAAIV EKIEEEVEKCKQRKSNKKVRVTVKPHLLYRPLEQQHGVVPDRDADFRLFDRVVNVRENFS VPAGLRGTVIGIKGASREADVLFEVLFDEEFAGGLTIRCSPGRGYRLPPSALVNLSHGSR SETGGQKLTAIVKPQPAASLSHSPQSPFVPTQAATEDEDEFCTIWQCLQGAGPAPPSLQD KGAAPPPEDTRVPRPADSARAQPRKQEPHRKFKEESRSAKAESRPHRGPGKQALGGPGKS NIKLLKRNENAEVTESQKAAGFPNTNKPSPGFENILASLNLHKDSEGQAPREEPPAELLS PQSFALGTRMLKEILKIDSSDLADHKNETKQFGNEAATSTSSRGERGPSSQAKQGKKPTS LADSGPGAEFRHAPVENVCWPAPSQLPPVPASVAELCRLCSLIGVPQPEFSFLRTPQTMT ICQVKLSNGLLVQGPQCPSESEAQERAAFSALQQLGTFGMNFPLPPPMFPPPTYPAAVPP GALPPIYPQPAGWEHYGSGLALGPATIMPPPPAHLPRSLPWGPPAPGKAFHHAALAGPPT GVHHQFIPLQVTKKRVASKKHFENKETQSSPATTPQTSQPAPPAAPGKPSPKLQPTPAGP SDSPAQGQGAPLRKAPASSSRRKSRKLAVNFGISKPSE NT seq 4977 nt NT seq  +upstreamnt  +downstreamnt atgaatggcatcatccaccagtgctcccatcccaacgacgatgatgtccacttcaggatt tccgatgataaaatcttcgcggacatttttcactacctggaggtgctgttccgcatcatc aagccaaggaaagtattctttatggccgttgacggcgtcgctcctcgagcaaaaatgaac cagcagcgtgggaggcgttttaggtcggcgaaagaggccgaggacaaaatcaagaaggca gtggagaaaggagagacccttcccaccgaggccaggttcgactccaactgcatcacacca ggaactgaattcatggccaggttacacgagcatctgaagtattttgtaaatctaaaaatt tctacagacaagtcgtggcaaggagttaccatctacttctcgggccatgagactcctgga gaaggcgaacataaaatcatggaatttatcagatcccagaaagcaaagccagatcatgac cccaacaccaggcactgcctgtatggtttagatgctgacctgatcatgcttggattaaca agccatgaagcacatttctctctcttacgagaagaggttcggtttggcggcaaaaagacg caaagaatatgtgcgccagaagaaaccacatttcacctcctacacttatctttaatgaga gaatatattgactatgagttttcatcgttgaaagacaagattacatttaagtacgacatt gaaaggataatagatgattggattttgatgggatttcttgttggcaatgattttatccct catctacctcatttacatattaatcatgatgcactgcctctactttatggaacgtatatc agcgtcctaccagaactcgggggctacattaatgaaagcgggcacctcaacttacctcgt tttgagaagtaccttgtgaaactatcagatttcgaccgggagcacttcagcgaagtgttt gtggacctcaagtggtttgagagcaaagttggtaacaagtacctcaacgaagctgcgggc gccgccgcggaggaagccttgaactacaaggagaagaagaaatcaaaggaccgggaaaac ttgtgttgggctgctttagacaaaaatgaagaaatggcagcatcgaaggataatctcgag gatgagcctgaagatgacgacctgtttgagactgagttcaggcagtacaagaggacgtac tacatggccaagatgggagtggacgtggtgtctgacgacttcctggcagctcaggccgcg tgctacgtgcaggccatccagtgggtcctgcactactactaccacggggtacagtcctgg agctggttctacccctaccactacgcccccttcctgtccgacatccgcaacatcagcgcg ctgcagatccagtttgagctcgggaagcctttcaagcccttcgagcagctgctcgctgtc ctgccggcagccagcaagagtctgctgcccgagtgctaccagcacctgatgaccagtgaa gactcaccaatcatagagtattaccctccggacttcaagacggacctgaacgggaagcag caggagtgggaggccgtggtcctcatcccgttcatagacgagaagcgactgctggaagcc atggagacgtgcaatcactccctcaagaaggaggagaggaagaggaaccagcacagcgag tgcctcatgtgctggtacgacggcgacgcggacttcccctacgcctcgccctggccagag aagttccccaccatagagcgctgccgcgcgagatacaaaataatatccttagatgcttgg cgtgtagacatcagcaagaacagaataaccaaagttgaccagaaggccttgtatttctgt ggattccctacactgaaacacatcaaacacaaattttttttgaagaaaagtggcgtgcaa gtgttccagcaaagcagtcgtggtgagaacatgatgttggagattttggtggatccagac tcagaggacgtgagcgtcgagaatgtggcttcatccatccttggaaagtccgtgtttgtg aattggcctcaccttgaagaagctagagtggtcggcgtgtcagacggagaaaccaagttt tacttggaagagcctccggggacacagaagctgtatttgggaagagctgtgccaccctct aaagtggtgcatcttggggacaaagaacaatctaattggtcaaaagaagttcaaggaatt tcagaacactacctcaggagaaaaggaataataataaacgagacgcctgctgttgtctat gctcagttgctcgcgggccggaaataccaaatcagtcctaacggtgacgtccacctggag aaacagtggtcgaagcaagttcttccgtttgtcttccaaaccattgtcaaggacatctgc gcgttcgactcgcgcttctcaaacatcaggacactgggcgacctgttcccccctgggagt gtggtcttcatgctcggcgccccctactacggctgcaccggggaggtccaggactcgggg gacgtgatccccgagggtcggatccgcgtgctgttcagcatcccgtgcgagcccgcgctg gacacgctcgtccagaaccagcacaaatattctataaagtacaacccaggatatgtgttg gccagtcgccttggagtgagtggataccttgtttcaaggtttacaggaagtatttttatt ggaagaggatctaggagaaaccctcacggagaccataaggcaaatgtgggtttgaacctc aaattcaacaaaaaaaatgaggaggtccctggctacacgaagcgagtcgggagcgagtgg atgtactcgccggccgccgagcagctgctcgcggactacttggagcgagccccagagctg ttcagttacatagccaaaaatagccaagaggatgtgttctatgaagatgacatttggcct ggagaaaatgaaaatggagctgagaaagttcaggaaattattacttggctgaaaggtcat cctgtcagcaccttgcctcgttcttcttgtgatttacaaattctggatgcagcaattgtt gagaaaattgaagaggaagttgaaaaatgcaagcaaaggaagagcaacaagaaggtgcga gtgacggtgaagccccacctgctgtaccgccccctggagcagcagcacggcgtggtgccc gaccgagacgccgacttccgcctcttcgaccgggtggtgaacgtgagagagaacttctcg gtgcccgccggcctccggggcaccgtcattgggatcaaaggggctagcagagaagccgac gtgctgtttgaggtgctgtttgatgaagagttcgccggaggcctgactatacggtgctct ccaggccgcggctaccggctgccccccagtgccttggtgaacctgtcccacgggagccgc tcagagacggggggccagaagctcacggccatcgtcaagccgcagcccgctgccagcctc agccactccccacagtcaccattcgttcccactcaggccgccacagaggacgaggacgag ttctgcaccatctggcagtgcctgcagggcgccggccccgccccgccctcgctccaggac aagggcgccgcgccccctccagaggacactcgtgtgcctcgcccggctgacagcgccagg gcccagccaaggaagcaggagccgcaccggaagtttaaagaagagtcccggagtgccaag gccgagagccggccacaccgggggccgggcaagcaggcgctcggagggcctgggaaatct aacattaagctgctgaagagaaatgaaaatgcagaagtcacagaaagccagaaggcggca ggttttccaaacacgaacaagccgagccccggattcgagaacattctagcatccttgaat ctccacaaagacagtgaaggacaggctccccgggaggagccgccggcagagctcctgtcc ccgcagtccttcgccctgggaacgcggatgcttaaggaaattctgaaaatagacagctct gacctcgcggaccataagaacgaaacgaagcagtttggaaacgaagccgccacctccacg agcagcagaggggagcgtggaccctcctcccaggccaagcaaggcaaaaagccgacctct ctcgcggacagcggccccggcgctgagttccggcacgcgcctgtggagaacgtgtgctgg cccgcgcccagccagctcccgcccgtgcccgcctccgtcgccgagctctgccggctctgc tccctcatcggcgtgccacagccggaattctccttcctgcggacaccacagacgatgacg atttgccaagtgaagctgtccaacggcctgttggtgcaggggccccagtgtccctccgaa agtgaggcccaggagagggccgcattctccgccctccagcagctgggcaccttcggaatg aacttccccttgcccccaccgatgttccctccgcccacataccccgctgccgtgccgccc ggagccctccctcccatctacccccagccagccggctgggagcactacggaagcggccta gccctggggccagccaccatcatgccgccaccacccgcccacctgccccgcagcctgccc tggggcccgccggcgcctgggaaggccttccaccacgccgccctcgccgggccgcccacc ggggtgcaccaccagttcatacccctgcaggtcaccaaaaagcgggttgcaagcaaaaag cactttgagaataaggagacccagagttccccagccaccacccctcagaccagccagcct gcacccccggccgcgcccggcaagccatcacccaaactgcagcccacccccgccggcccc tcggacagccccgcccagggccagggcgcccccctccgcaaagcaccagccagctcgtcc aggaggaagtccagaaagctggctgtcaactttggcatttccaaaccttccgaataa

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