Sorex araneus (European shrew): 101540341
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Entry
101540341 CDS
T07854
Symbol
PRPF40A
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A
KO
K12821
pre-mRNA-processing factor 40
Organism
sara
Sorex araneus (European shrew)
Pathway
sara03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sara00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101540341 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sara03041
]
101540341 (PRPF40A)
Spliceosome [BR:
sara03041
]
Complex A
U1 snRNP components
U1 related factors
101540341 (PRPF40A)
Complex B
101540341 (PRPF40A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
FF_PRPF40A
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
101540341
NCBI-ProteinID:
XP_004620568
LinkDB
All DBs
Position
Unknown
AA seq
931 aa
AA seq
DB search
MCSGTGRRRSSPSPTMRPGTGAERGGLMMGHPGMHYAPMGMHPMGQRANMPPVPHGMMPQ
MMPPMGGPPMGQMPGMMSSVMPGMMMSHMSQASMQPALPPGVNNMDVAAGIYTICGAKSM
WTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTK
ESRWAKPKELEDLEGYQNTIVAGSLITKSNLHAMIKAEESSKQEECAPAAAAPVPTAEIP
TTMSTMAAAEAAAAVVAAAAAAAAAAAAANASASTSASNTVGGTVPVVAEPEVTSIVATV
VDNESSVTISTEEQGQLTSTPAVQDQSEVSSNAGEETAKQETVADFTPKKEEEESQPAKK
TYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKV
QTEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLE
IYEDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAED
EELQNMDKEDALICFEEHIRALEKEEEEEKQKSLLRERRRQRKNRESFQIFLDELHEHGQ
LHSMSSWMELYPTISSDIRFTNMLGQPGSTALDLFKFYVEDLKARYHDEKKIIKDILKDK
GFVVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRK
ESAFKSMLKQATPPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEHECQH
HHSKNKKHSKKSKKHHRKRSRSRSGSDSDDDDSHSKKKRQRSESRSASEHSSSAESERSY
KKSKKHKKKSKKRRHKSDSPESDGEREKDKKEKDRESEKDRTRQRSESKHKSPKKKTGKD
SGNWDTSGSELSEGELEKRRRTLLEQLDDDQ
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atgtgcagcggcactggccgccggcggagcagtccgagcccgacgatgaggccggggacg
ggagccgagcgcggaggcctcatgatgggtcaccctggcatgcattatgccccaatggga
atgcaccctatgggtcagagagccaatatgcctcctgtacctcatggaatgatgccacag
atgatgccccctatgggggggccaccaatgggacaaatgcctggaatgatgtcctcagtg
atgcctggaatgatgatgtctcatatgtctcaggcatccatgcagcctgcattaccgcca
ggagtaaataatatggatgttgcagcaggtatctatactatttgtggtgctaaatcaatg
tggactgaacataaatctcctgatggaaggacttactactataatactgaaacaaaacag
tctacttgggagaaaccagatgatcttaaaacacctgcagagcaacttttgtctaaatgc
ccctggaaggagtacaaatctgattctgggaagccttactattacaattctcaaacaaaa
gagtcccgttgggcgaaaccaaaagaacttgaggatcttgaaggataccagaataccatt
gttgctggaagtcttattacaaaatcaaacctgcatgcaatgatcaaagctgaagaaagc
agtaaacaagaagagtgcgccccagcagcagcagccccggtccctacagcagagattcca
accaccatgagcaccatggctgctgcagaagcagcagctgctgttgtagccgctgcagcc
gcagcagcagccgctgcagctgcagccaatgccagtgcttctacctctgcttctaatact
gttgggggaactgttccagttgtagctgagcctgaagttacttcgattgttgctactgtt
gtagataatgaaagttcagttacaatttcaacagaagaacaagggcagcttactagtacc
cctgctgttcaggatcaaagtgaagtatccagtaatgctggggaagaaacagctaaacag
gaaactgtagctgattttactcctaaaaaagaggaggaggaaagtcagccagcaaagaag
acgtatacttggaatacaaaagaagaggcaaagcaagcatttaaagaattactaaaagaa
aagcgggttccgtccaatgcctcatgggagcaagctatgaaaatgatcataaatgatcca
agatacagtgctctagcaaagctgagcgaaaaaaagcaggcctttaatgcttataaagtt
caaacagagaaagaagagaaagaagaagcacgatcaaaatacaaagaggctaaggaatcc
tttcagcgttttcttgaaaatcatgagaaaatgacttctacaaccagatacaaaaaagca
gaacaaatgtttggagaaatggaagtctggaatgcaatatctgaacgtgaccgtttggaa
atctatgaagatgttttattttttctttcaaaaaaagaaaaggagcaagcaaagcagttg
cgaaaaagaaattgggaagccttaaaaaacatacttgacaatatggctaacgtaacctat
tctacaacttggtctgaagcccagcaatatctaatggataatccaacttttgctgaagat
gaggaattacaaaatatggataaagaagatgcattaatttgcttcgaagagcatattcgg
gctttagaaaaggaagaagaagaagaaaaacagaagagtttgctaagagaaagacggcga
cagcgtaaaaatagggaatcttttcagatatttttagatgaattgcatgaacatggacag
ctgcattctatgtcgtcttggatggaactctatccaacaattagttctgacattcgattt
actaatatgcttggtcagccgggatcaactgcacttgaccttttcaagttttatgttgag
gatcttaaagcacggtatcatgatgagaagaagataataaaagatatactaaaggataaa
ggttttgtagttgaagttaatactacttttgaagactttgtggcaataatcagctcaact
aagagatcaaccacattagatgcaggaaatattaagttggctttcaacagtttactagaa
aaggcagaagcccgtgagcgtgagagagaaaaagaagaggcccggaagatgaaaagaaag
gagtctgcattcaagagtatgttgaaacaggctacccctccaattgaattggatgctgtc
tgggaagatattcgggagagatttgtgaaagagccagcatttgaggacataactctagag
tctgaaagaaaacgaatatttaaagattttatgcatgtccttgagcatgagtgtcagcac
catcattcaaagaacaaaaagcattctaaaaagtctaaaaaacatcacaggaaacgatct
cgttctcgatcggggtcagattcagatgatgatgatagccattcaaagaaaaaaaggcag
cgatcggagtctcgctctgcttcggaacattcttctagtgctgagtctgagagaagttac
aagaaatcaaaaaaacacaagaaaaaaagcaagaagaggagacataaatctgattctcca
gaatcagatggggagcgagaaaaggataaaaaagaaaaagaccgagagagtgagaaagac
agaacgagacaaaggtcagaatcaaagcacaaatcgcctaagaaaaagactggaaaagat
tctggtaattgggatacttctggcagtgaactaagcgaaggagagttggaaaagcgcaga
aggacccttttggagcaactggatgatgatcaataa
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