Sorex araneus (European shrew): 101541335
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Entry
101541335 CDS
T07854
Symbol
COL4A6
Name
(RefSeq) collagen alpha-6(IV) chain
KO
K06237
collagen type IV alpha
Organism
sara
Sorex araneus (European shrew)
Pathway
sara04151
PI3K-Akt signaling pathway
sara04382
Cornified envelope formation
sara04510
Focal adhesion
sara04512
ECM-receptor interaction
sara04518
Integrin signaling
sara04820
Cytoskeleton in muscle cells
sara04926
Relaxin signaling pathway
sara04933
AGE-RAGE signaling pathway in diabetic complications
sara04974
Protein digestion and absorption
sara05146
Amoebiasis
sara05165
Human papillomavirus infection
sara05200
Pathways in cancer
sara05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
sara00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
101541335 (COL4A6)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101541335 (COL4A6)
04518 Integrin signaling
101541335 (COL4A6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101541335 (COL4A6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
101541335 (COL4A6)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
101541335 (COL4A6)
09154 Digestive system
04974 Protein digestion and absorption
101541335 (COL4A6)
09158 Development and regeneration
04382 Cornified envelope formation
101541335 (COL4A6)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
101541335 (COL4A6)
09162 Cancer: specific types
05222 Small cell lung cancer
101541335 (COL4A6)
09172 Infectious disease: viral
05165 Human papillomavirus infection
101541335 (COL4A6)
09174 Infectious disease: parasitic
05146 Amoebiasis
101541335 (COL4A6)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
101541335 (COL4A6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sara04147
]
101541335 (COL4A6)
00536 Glycosaminoglycan binding proteins [BR:
sara00536
]
101541335 (COL4A6)
Exosome [BR:
sara04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
101541335 (COL4A6)
Glycosaminoglycan binding proteins [BR:
sara00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101541335 (COL4A6)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
101541335
NCBI-ProteinID:
XP_012787672
LinkDB
All DBs
Position
Unknown
AA seq
1693 aa
AA seq
DB search
MREKVRALCIGLCVWLSLEYCKSDAATGPLDLPVKMNSSSLSRSWFSAFYSWWTPEGQPG
PIGIQGPTGPQGFTGPNGLSGLKGEKGSPGPLGPYGPKGDKGPIGIPGFLGIDGIPGHPG
QPGPRGPPGLDGSNGTKGAVGFPGTHGYPGLIGSVGLSGNKGAKGEPALSRSNSKGMKGN
PGLPGLKGNYGPQGAPGSPGFKGLKGPPGLHGPPGSPGLPGPDGNMGLGFQGEKGVKGDI
GLPGPAGPPPSTGELEFMGFPKGDKGSKGELGPQGFPGAKGLPGFPGFGISGEKGEKGIS
GLPGPRGPMGFKGAQGPPGSQGMKGVPGFRGLNGFPGIKGEKGGIGLPGPDVFVDTDGAV
ISGYPGDTGLPGLPGLKGNQGIKGQRGPTGIPGFPALPGVPGTKGLDGVPGLKGNQGNPG
HTTVGIAGLPGRDGLPGQRGPPGPPGPAFYTTILHNIGHPGHKGKQGLKGNSGLKGVKGE
PGFCVCDGGILNTGPPGEPGLSGLPGIKGLPGPKGAKGDLGSEGPRGPSGAPGLFGPQGP
KGLKGNKGEPTISAGSGMPGKKGELGLKGLPGEKGVSGKDGLPGLPGTKGLPGDDGLGFP
GEKGFAGLPGEKGHSGPAGPSGIGLPGSPGPKGLPGDKGEDGLPGQKGLPGLPGITLPCV
IPGSYGPPGFPGASGFPGPKGARGLSGIPGQPGPRGIKGDLGIPGSVPLPELPGFPGPRG
EKGLPGLPGTPGKDGFPGRIGSPGLTGFKGTPGEVFSAEKGVRGEKGLKGFPGEKGLPGE
AGYPGPKGFPGNSGLLGPKGEKGNPGIPGFKGQPGFPGYDGASGVKGKPGFPGVPGTPGI
SGHPGMKGSKGEKGTPGTNGKIGLPGLKGLPGIPGITGYPGNPGLPGHTGFPGLPGLKGE
KGSKGLMGFPGMPGLHGVPGASGLKGIPGLVGAMGPSGPAGSPGLKGDQGEKGPAGTPSQ
RPPVLNYQFKGDKGAQGADGPKGFPGPRGDKGDIGLPGLPGLPGIPGYHNTTKGVPGVAG
PLGFTGLRGLPGLKGSPGIPGFLGIPGETGSQGLSGTPGFPGAPGLPGLKGEKGETLGIS
GIPGPKGQPGEFGLKGIKGQDGLVGEKGFPGNKGEDGRVGIPGDIGLPGSPGIPGTAGMT
GHPGFLGSPGHPGATGLLGLPGLKGTKGFPGLPGLHGLNGLPGNKGDHGTQGTSLTGVPG
PAGPPGLKGEKGSPGTGVGISGNPGMKGQKGSQGFPGLQGPAGPPGAPGLSFPSVIAGQP
GDPGRPGLDGERGRPGLPGPPGLPGPTSDQGDPGDPGIPGIPGPQGPQGDQGIPGFSGLP
GELGLKGMRGEPGFMGIPGKVGPPGDPGFPGMKGEAGPRGFSGPRGAPGQTPTAEELQAP
PGVSGLPGIDGIPGLAGDPGVQGPGGLQGSKGLPGISGKDGPNGLPGPPGALGNPGVPGL
QGPPGFEGPPGKQGPHGKPGMPAQSVRVGYTLVKHSQSKQVPQCPLGMKQLWVGYSLLFV
EGQEKAHNQDLGFAGSCLPHFTTIPFIYCNINEVCHYARRNDKSYWLSTTASIPMMPISQ
AQISQYISRCSVCEAPSQAIAVHSQDIAIPQCPLGWRSLWIGYSFLMHTAAGAEGGGQSL
VSPGSCLEHFRATPFIECSGARGTCHYFANKYSFWLTTVEEQQQFEEEPVSETLKVGQLH
TRVSRCQVCVKSL
NT seq
5082 nt
NT seq
+upstream
nt +downstream
nt
atgagggagaaagtaagagctttgtgtataggtttatgcgtgtggctttctttggagtac
tgcaagtcagatgctgcgacagggcccctggatctgccagtgaagatgaactctagctca
ttatccagatcgtggttttctgcattctactcgtggtggacccctgaggggcagccaggc
ccaattggaattcaaggcccaacaggtcctcaaggattcactggccctaatggtttatca
ggattgaaaggggaaaagggttccccaggccctctgggaccatatggaccaaaaggagat
aagggtcccattggaattcctggctttcttggcattgacgggatcccaggtcaccctgga
cagccaggacccagaggcccaccaggcctggatggttctaatggaactaaaggagcagtt
ggattcccaggtactcatggctatcccggacttattggatctgtggggctttctggtaat
aaaggagctaaaggcgaacctgccctttccaggagtaattccaaaggaatgaagggtaat
cctgggctgcctggactaaaaggaaactacggtccacaaggagcacctggatctccagga
tttaaaggactcaagggaccaccaggattgcatggcccaccaggctcaccaggcctccct
ggtcctgatggtaatatgggtttaggtttccaaggagaaaaaggagttaagggggacatt
ggcctccctggccctgcaggaccaccaccatctactggagaactggaatttatgggattt
cccaaaggagataaaggatctaagggcgaactaggacctcagggtttcccaggagccaag
ggccttccaggcttcccggggtttggaatttctggagaaaagggagaaaagggaatttct
ggtttaccaggacctaggggtcccatgggttttaaaggagcccaaggtcctcctggaagt
cagggcatgaagggggtccccggtttccgtgggctgaatggattcccaggaattaagggt
gaaaagggtggcattggtctgccagggccagatgttttcgtcgatacagatggtgctgtg
atctcaggttaccctggagacaccggtttgccaggccttcccggtcttaaaggaaaccaa
ggcatcaaaggtcaacgtggtcctactggaatacctggcttcccagctttaccaggtgtc
cctggtaccaaagggctagatggagttccgggcctgaaagggaaccaaggaaaccctggc
cacaccacagttggcatagctggtctccctggtagagatggtttgccaggccaacgtggt
cccccaggtccacctggtccagcattttatactactatcctacacaacatagggcacccc
ggtcacaaaggaaagcaaggtctaaaaggaaactctggcctcaaaggagtgaaaggggaa
cccggtttttgtgtttgtgatggtggcattctcaacactggcccacctggggagccaggc
ctgtctgggctaccaggtatcaaaggccttccaggtcccaaaggagccaaaggagatcta
ggctctgaaggtccacggggtccatcaggagctccaggtttatttggacctcaaggtcct
aaaggactcaaaggaaataagggtgagccaactatcagtgcaggatctgggatgccagga
aagaagggtgagcttggtctcaagggacttcctggtgagaaaggagtctcaggcaaggat
ggactgccaggtttaccaggcacgaaaggacttccaggtgatgatggactgggcttccca
ggtgaaaagggatttgcaggacttcctggtgaaaagggccatagtggaccagctggtcct
tcaggaattgggctaccaggatctcctggacctaaagggcttcctggagataaaggagaa
gatggattacctggacaaaaaggcctccctgggcttccaggtatcaccttgccatgtgta
attcctgggtcatatggtccaccaggatttccaggagcttctggatttccaggtcctaaa
ggagcccgtggtctctccgggattccaggccagcctggaccacgtggaattaaaggagac
ctggggattccaggatcagttcctctccctgaattgccaggatttcctgggcctcgtggt
gagaaaggcttgcctgggttacctgggactcctggaaaagatggcttccctgggagaatt
ggcagtccaggattaaccggttttaagggaacccctggcgaggtctttagtgctgagaaa
ggtgttagaggagaaaaaggcttgaagggatttccaggagagaaaggacttcctggagaa
gctggctatccaggacccaaaggttttcctgggaattctggcttgcttggtcccaaagga
gagaagggtaaccctggaataccaggtttcaagggacaaccaggcttccctgggtatgat
ggcgcatctggagtcaaaggcaaacctggattcccaggggtaccaggaacaccaggtatt
tctggacatcctggaatgaaaggttcaaaaggtgaaaagggtacccctggaacaaatggc
aagataggcctacctgggctgaaaggccttcctggaattccagggataactggttaccca
ggaaacccaggccttccaggacacactggcttcccaggccttcccggcttaaagggtgaa
aagggttccaagggactgatgggctttccaggaatgccaggtctccatggtgttcctggt
gcaagtggactgaagggaattcctggattagtcggagcaatgggaccatctggacccgct
gggagccctggtttaaaaggagaccaaggtgagaaggggccagccggaacacccagtcaa
agaccaccagtgctgaactaccaattcaaaggagataaaggcgctcagggtgcagatgga
cccaaaggttttcctggacccagaggtgacaaaggagatattggcctccctggactgccc
ggcttgcctggaattcctggatatcataacaccaccaaaggagttcctggggtggcagga
ccccttggtttcacaggcctgcgaggcttacctggcttgaaagggtcccctggaatccca
ggattcctaggaataccaggagaaactggttcacagggtctcagtggaactcctggattc
ccaggtgcacctggtctcccaggcctgaaaggagagaaaggtgagacacttggaatttct
ggcatcccaggacccaagggacaacctggagagtttggccttaaaggtataaaaggacaa
gatggactagttggcgaaaaaggtttcccaggaaacaaaggtgaagatggaagagttggc
attcctggagatattggccttcctggctccccaggcatccctggcactgctggcatgact
ggacatccaggctttctgggttctcctggccacccaggggcaactgggctgctgggactc
cctggcttaaaaggaaccaaaggttttcctggacttcctggcttacatggactgaatggt
cttccaggaaacaaaggagatcatggaacacaaggaactagtttaactggtgtgcctgga
ccagctggcccacctggtctcaaaggagaaaaaggctctccaggaactggtgttggtatc
tcaggaaacccagggatgaaaggacagaaaggtagccaaggattcccaggtctccagggc
cctgctggtccccctggtgccccaggcctctcatttccctcagtcatagcaggacagcct
ggcgaccctgggcgaccaggcctagatggagaacgaggccgtccaggccttccaggacct
ccaggtctccctgggccaacctcggatcaaggcgaccctggagaccctggcatccctgga
attcctggccctcaagggccccagggagaccaaggaattccaggtttctctggccttcct
ggagagctaggactaaaaggcatgagaggtgagcctggattcatgggaattccaggcaag
gttggtccacctggagacccaggatttcccgggatgaagggagaggcagggccaagaggc
ttttctgggccccgaggtgctcctggacaaacacccactgcagaagaactccaggcccct
cctggagtctcgggtctaccaggcattgatggcatccctggccttgcaggggaccctggg
gttcaaggtcctggaggcttacaaggctccaaaggattacccggcatctctggcaaagat
ggccccaatggactccccggcccacctggggctcttggcaatcctggtgtccctggacta
caaggccctccaggatttgaaggacctccagggaagcagggaccccatgggaagcctgga
atgcctgcgcagagtgtgagagtgggctacactctggtgaaacacagccagtctaaacaa
gtgccccagtgccctctcgggatgaagcagctgtgggtgggttacagcttgctgtttgtg
gagggacaggagaaagcccacaaccaggacttagggttcgctggctcctgtttgccccac
ttcaccaccatacccttcatctactgcaacatcaatgaagtgtgccactacgctaggcgc
aacgacaaatcttactggctctctacgaccgcctctatccctatgatgcccatcagccag
gcccagatttcccaatacatcagccgctgctctgtgtgtgaggcaccctcgcaagccatt
gctgtgcacagccaagacatcgccattccacagtgtccactgggctggcgcagcctctgg
attgggtactccttcctcatgcacaccgccgctggtgctgagggtgggggccagtccctg
gtctcacctggatcctgcctggagcattttcgagctactcctttcatcgagtgcagtggt
gcccggggcacctgccactactttgccaacaagtacagtttctggctgacgacagtggaa
gagcaacagcagtttgaagaagagcctgtatcagaaacgctcaaagtcggacagctccat
acccgggtcagccgctgccaggtgtgtgtgaaaagcctgtaa
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integrated database retrieval system
