Sorex araneus (European shrew): 101542046
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Entry
101542046 CDS
T07854
Symbol
CPSF3
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
sara
Sorex araneus (European shrew)
Pathway
sara03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sara00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101542046 (CPSF3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sara03021
]
101542046 (CPSF3)
03019 Messenger RNA biogenesis [BR:
sara03019
]
101542046 (CPSF3)
Transcription machinery [BR:
sara03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
101542046 (CPSF3)
Messenger RNA biogenesis [BR:
sara03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
101542046 (CPSF3)
U7-dependent histone pre-mRNA processing factors
101542046 (CPSF3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
101542046
NCBI-ProteinID:
XP_012788391
LinkDB
All DBs
Position
Unknown
AA seq
684 aa
AA seq
DB search
MSAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLID
PAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADD
MLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDF
SRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPV
FALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININ
NPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVE
GTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGE
QNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQR
VSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFNLLFYQLQKLTGDVEEL
EIQEKPALKVFKNITVIQEPGMVVLEWLANPSNDMYADTVTTVILEVQSNPKIRKGAVQK
VSKKLEMHVYSKRLEIMLQDIFGEDCVSVKDGAILGVTVDGKTANINLETRTVECEEGSE
DDESLREMVELAAQRLYEALTPVH
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcgattccggccgaggaaagtgaccagctgctgatccgaccgcttggagctgga
caagaagtaggaagatcatgtattatcctggagttcaagggaagaaaaataatgctggac
tgtgggattcaccctggcctggaaggaatggacgctcttccttacatcgatttgatcgat
ccagcagaaattgatcttctactcattagtcatttccatttggatcactgcggagctctg
ccctggtttctacagaagacaagtttcaaaggaagaacatttatgactcatgccacgaaa
gccatttatagatggcttctttcagattatgtcaaagttagtaacatatcagcagatgac
atgctatatacggagacagatttggaggagagcatggacaaaattgaaactatcaacttt
catgaagttaaggaagtcgcaggaatcaagttttggtgttaccacgcggggcacgttctc
ggcgctgccatgttcatgatcgagatcgcgggcgtgaagcttttatatacaggtgatttc
tcaagacaagaagatagacacttaatggcagctgaaattcccaatattaagcctgatatt
cttattatcgaatccacttacgggacccatatccacgagaagcgtgaagagagagaagcg
agattctgtaacacggtccatgatattgtaaaccggggaggcagagggctcattcctgtc
ttcgcccttggaagggctcaggagctgcttctgattttagatgagtactggcagaatcac
ccggaactccatgacattccaatatactatgcatcatctctggccaagaagtgtatggca
gtgtaccagacttacgtcaatgccatgaatgacaaaatccgaaagcagatcaacatcaat
aacccctttgttttcaaacacattagtaacctcaagagcatggatcattttgatgacatt
ggccccagcgtggtgatggcctccccgggtatgatgcaaagcggcctctccagagagctc
tttgagagctggtgcaccgacaagaggaacggcgtcatcatcgcaggctactgcgtggag
ggcaccctcgccaagcatatcatgtctgaacctgaagaaattacgaccatgtctggacag
aagttaccattgaaaatgtccgttgattacatttctttctctgctcacacagattaccag
caaaccagtgaatttattcgtgctttgaaaccgcctcatgtgattttagtgcacggggag
cagaacgaaatggccaggttgaaagcagccctgattcgagaatacgaagataacgatgaa
gttcacatagaggttcataatcctcggaacacggaagcagtcaccttgaatttcagggga
gagaaactggccaaggtcatgggctttttagcagacaaaaaaccagaacaaggccagcga
gtctcaggaatacttgttaagagaaactttaattatcacatactttctccttgtgacctc
tccaattataccgacctggccatgagcaccgtcaaacagacccaggcgatcccgtacacg
gggccttttaacttgctcttttaccagctacagaaactgacaggtgatgtagaagaatta
gaaattcaagaaaaacctgctttgaaagtgtttaaaaatattactgtaatacaggaacca
ggaatggtggtgttagagtggttagcgaacccttccaatgacatgtatgcagatactgta
acgaccgtgatattggaagttcagtcaaacccgaaaataaggaaaggtgcagtacagaag
gtctccaaaaaattagaaatgcacgtttatagcaaaagattggagatcatgcttcaagac
atatttggagaagattgtgtgagtgtaaaagatggtgctattcttggtgtcaccgtggat
ggaaaaactgcgaatataaacttggagactcggaccgtagaatgtgaggaaggaagtgaa
gatgacgaatccctccgagaaatggtagagctggctgcgcagcgactctacgaggccctc
acgcccgtccactga
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