Sorex araneus (European shrew): 101542213
Help
Entry
101542213 CDS
T07854
Symbol
PRPF8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
sara
Sorex araneus (European shrew)
Pathway
sara03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sara00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101542213 (PRPF8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sara03041
]
101542213 (PRPF8)
Spliceosome [BR:
sara03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
101542213 (PRPF8)
Complex C
U5 SnRNP specific factors
101542213 (PRPF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
101542213
NCBI-ProteinID:
XP_004605037
LinkDB
All DBs
Position
Unknown
AA seq
2335 aa
AA seq
DB search
MAGVFPYRGPGNPVPGPLAPLPDYMSEEKLQEKARKWQQLQAKRYAEKRKFGFVDAQKED
MPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVPVLY
HITGAISFVNEIPWVIEPVYISQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYAD
NILDVEPLEAIQLELDPEEDAPVLDWFYDHQPLRDSRKYVNGSTYQRWQFTLPMMSTLYR
LANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFNDIN
KIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPIS
HRHSVKSQEPLPDDDEEFELPEFVEPFLKDTPLYTDNTANGIALLWAPRPFNLRSGRTRR
ALDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATK
FFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRF
GNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMR
QIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAAGWRVWLFFMRGITPLLERWLGNLLARQF
EGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCW
KANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLT
RLYLKAEQERQHNYLKDGPYITAEEAVAVYTTTVHWLESRRFSPIPFPPLSYKHDTKLLI
LALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMD
LYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGIN
NLQDVWETSEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYK
DMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDIATE
AAHPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARM
RLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKC
RTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIV
NKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
ELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFI
DSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRT
DFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEG
LFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGI
FMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSY
KMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYA
RAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKANPAL
YVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTT
KPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQ
IIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLY
DDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVE
VQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLT
ATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKET
GYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLP
GQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKIMADNPSWDGEKTIIITCSFTP
GSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWN
YNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA
NT seq
7008 nt
NT seq
+upstream
nt +downstream
nt
atggccggagtgtttccttaccgagggccaggaaatccggtgcccggccctctcgccccg
ctgccggactacatgtcagaggagaagctgcaggagaaagcccgaaaatggcagcagttg
caggccaagcgttatgcagaaaagcgcaaatttggatttgtggatgctcagaaggaagac
atgcctccagaacatgtcagaaagatcattcgagaccatggagacatgacaaataggaag
tttcgccatgacaagagagtctacttgggtgctctaaagtacatgccccatgcagtcctc
aaactcttggagaacatgcctatgccatgggaacagattcgggacgtgcctgtgctgtat
cacatcactggagccatttcatttgtcaatgagattccgtgggtcattgagcccgtctac
atctcccagtgggggtcaatgtggattatgatgcgccgagaaaaaagagacaggaggcat
ttcaagaggatgcgtttccctccttttgatgatgaggagccgcctttggactatgctgac
aatattctagatgttgagcctctggaggccattcagctggagctggaccccgaggaggat
gctcctgtgttggactggttctatgaccaccagccattaagggacagcaggaagtatgtg
aatggctctacttaccagcgctggcagtttacgctgcccatgatgtccactctctatcgc
ctggccaatcagctcctcacagacttggtggacgacaactacttctacctgtttgatctc
aaggccttctttacctccaaggccctcaatatggctattccaggaggccccaaatttgaa
cctcttgttcgagatatcaacctgcaggatgaagactggaatgaattcaatgatattaat
aagatcatcattcgtcagccgatccggactgagtacaagattgcattcccttacttatac
aacaacctcccacaccatgtccaccttacttggtaccacactcctaatgttgtcttcatc
aaaaccgaggatcctgatttgcctgctttctactttgatcctttgatcaacccaatttcc
catcggcactctgtcaagagccaggaaccgttgccagatgacgatgaggagtttgaactc
ccggagtttgtggagcccttcttgaaggacacgcccctctacacagacaataccgccaat
ggcatcgccctgctctgggcgccacggcccttcaaccttcgctcgggtcgcactcgccgg
gccctggatattccccttgtcaagaactggtatcgtgagcattgccctgctggacagcct
gtgaaagtcagagtctcttaccagaagctgctcaagtactatgtgctgaatgccctgaag
caccggcccccaaaagcacagaagaagaggtatctcttccgctccttcaaagccaccaaa
ttcttccagtccactaagctggactgggtggaagtggggctgcaggtttgccgccagggc
tacaacatgctcaaccttctcatccaccgtaaaaacctcaactacctgcacttggattac
aacttcaacctcaagccagtcaagacgctcaccaccaaggaaagaaaaaaatctcgcttt
gggaatgcttttcatctgtgtcgagaggttctgcgtctaacgaagctggtggtggatagt
catgtgcagtatcgattgggcaatgtggatgccttccagctggcagatggattgcagtat
atctttgcccatgtggggcaactgacaggcatgtaccgctacaaatacaagctgatgcgg
cagattcgcatgtgcaaggacctgaagcatctcatctactaccgcttcaacacgggccct
gtaggaaaggggcctggctgtggcttctgggctgctggatggcgggtttggctgtttttc
atgcgtggcatcacccctctgttggagcggtggctgggtaacctcctggcccgacagttt
gaaggcagacactcgaaaggagtggccaagactgtgacaaaacagcgagtggagtcgcat
tttgaccttgagcttcgggcggccgtgatgcatgacattctggacatgatgccggagggg
atcaagcagaacaaggccaggacaatcttgcagcatctcagtgaagcctggcgctgctgg
aaggccaatatcccctggaaggttcccgggctgccaacacccatagaaaatatgatcctt
cgctatgtgaaggccaaggctgattggtggaccaacactgcccactacaaccgagagcga
atccgccgtggggccactgtggataagactgtttgcaaaaagaacctgggccgtctcacc
cggctctacctgaaggcagagcaggagcgacagcataactacttgaaggatggaccttac
atcactgcggaggaagcagtggcagtgtacaccaccactgtgcattggttggaaagccgc
aggttctcacccattcctttccccccgctctcctacaagcatgacaccaagttgctcatc
ttggccttggagcggcttaaggaagcttacagtgtgaagtctcgtttaaaccagtctcag
agggaggagctgggtctgatcgagcaagcctatgacaacccccatgaagcactgtcccgc
atcaagcgtcacctcctcacacagagagccttcaaggaagtgggcatcgagttcatggat
ctctatagtcacctggtgccagtttatgatgtggagcccctggaaaagataactgacgcc
tatctggaccagtacctgtggtatgaagctgataagcgccgtcttttcccaccctggatc
aagcctgctgacacagaaccacctcctctactcgtttacaagtggtgccaaggcatcaat
aacctgcaggacgtgtgggagaccagcgagggcgagtgcaacgtcatgctggagtcacgc
tttgagaagatgtatgagaagatcgacctgaccctgctcaatcgactgctccgcctcatt
gtggatcacaacatcgccgactacatgacagccaagaacaacgtcgtcatcaactataag
gatatgaaccacacaaactcatatgggatcatcagaggccttcagtttgcctcgttcatc
gtgcagtactatggcctggtgatggatttgcttgtgttgggtttgcaccgggccagtgag
atggctgggcctccacagatgcccaatgatttcctcagtttccaggacatcgccacagag
gctgcccaccccatccgtctcttctgcagatacattgatcgcatccatatcttctttagg
ttcacagcagatgaggctcgggacctgatccagcggtacctcacagaacatccggacccc
aataatgagaacatcgttggctataacaacaagaagtgctggccccgtgatgcccgcatg
cgcctcatgaagcatgacgtcaacttgggccgggcagtgttctgggacatcaagaaccgg
ctgccacggtcagtgactacagttcagtgggagaacagtttcgtctccgtgtacagcaag
gataaccccaacctgctgttcaacatgtgtggctttgagtgccgcatcctgcctaagtgc
cgcaccagctatgaggagttcacccacaaggacggggtctggaacctgcagaacgaggtg
accaaggaacgaacagctcagtgcttcctgcgtgtggatgatgagtcaatgcagcgcttc
cacaaccgcgtgcgtcagattctgatggcctctggttccaccaccttcaccaagatcgtg
aataagtggaacacagctctcattggactgatgacctactttcgggaggctgtggtaaac
actcaggaactattggacctcctggtcaagtgtgagaacaagatccagacacgtatcaag
attggtctcaactctaagatgccgagtcggttcccccctgtcgtgttctatacccccaag
gaactgggcggactgggcatgctctccatgggccacgtgctcatcccccagtctgacctc
aggtggtccaagcagacagatgtgggtatcacacactttcgttcaggaatgagccacgaa
gaagatcagctaattcccaatttgtaccgctacatacagccatgggaaagtgaattcatt
gattctcagcgggtctgggctgagtatgcactcaagagacaagaggccattgctcagaac
agacgattgactttagaagatctcgaagactcttgggatcgtggtattcctcgaatcaac
actctcttccagaaggaccgacatacattggcttatgataagggctggcgtgttcgaact
gactttaagcagtaccaggtcctgaagcagaaccctttctggtggacccaccagcgtcac
gacgggaagctctggaacctgaacaactaccggacggacatgattcaggccctgggtggt
gtagagggcatcctggaacacacgctgttcaagggcacttacttccccacctgggagggg
ctgttctgggagaaggccagtgggtttgaggaatctatgaaatggaagaagctaacgaac
gctcagcgatccggtttgaaccagatccccaatcgtcgattcaccctctggtggtccccc
accatcaatcgggccaatgtgtacgtgggctttcaggtacagctggacctcaccggcatc
ttcatgcatggcaagatccccacgctgaagatctccctcatccagatcttccgagctcac
ttgtggcagaagatccacgagagcatagtgatggacttgtgtcaggtgttcgaccaggaa
ctggatgctctggaaattgagacagtacagaaggagacaatccacccccgaaagtcctat
aagatgaactcctcttgtgcagatatcctgctctttgcctcctataaatggaatgtctct
cggccctccttgctggcagattccaaggatgtgatggacagcaccaccactcagaagtat
tggatcgacatccagttgcgctggggggactacgattcccatgacattgaacgctacgcc
cgggcaaagtttttggactataccacagacaacatgagtatctacccttcacccacaggt
gtgctcatcgccatcgacctggcctataacctgcacagtgcctatggaaactggttccca
ggcagcaagcctctcatccagcaggccatggccaagatcatgaaggcaaaccctgccttg
tatgtgttacgtgagcggatccgcaaggggctgcagctctactcatctgagcccactgag
ccttacctgtcctcgcagaactacggtgaactcttctccaaccagatcatctggtttgtg
gacgacaccaatgtctacagagtcactatccataagacctttgaagggaacttgactacc
aagcccatcaatggggccattttcatcttcaatccacgcacggggcagctgttcctcaag
ataatccacacatcggtgtgggctggacagaagcgtttggggcagctagcgaagtggaag
acagccgaggaggtagctgctctgatccgctccctgccggtggaggagcagcccaagcag
atcatcgtcaccaggaagggcatgctggacccgctggaggtgcacttgctggacttcccc
aatatcgtgatcaaagggtcggagctccagctccccttccaagcttgtctcaaggtggaa
aagtttggggacctcatcctgaaagccacggagccccagatggttctcttcaatctctac
gatgactggctaaagaccatttcctcgtacacggctttctcccgcctcatcctgatcctt
cgtgccctgcatgtgaacaatgaccgggccaaggtgatcctgaagccagataagacgacc
atcacagagccacaccacatctggcccactctcactgacgaggagtggatcaaggtggag
gtgcagctaaaggaccttatcttggctgactatggcaagaaaaacaatgtgaatgtagcg
tcactgacacagtcagaaatccgggacatcatcctgggcatggagatctcggcgccgtca
cagcagcggcagcagattgctgagattgagaaacagaccaaggagcagtcacagctgaca
gcgacgcagacgcgcactgtcaacaagcatggagacgagatcatcacctccaccaccagc
aactatgagacccagactttctcctctaagactgagtggagggtcagggccatctccgct
gccaatctgcacctgcggaccaatcacatctacgtctcgtctgatgacatcaaggagact
ggctacacttacatccttcccaagaacgtgcttaagaagttcatctgcatatctgacctt
cgggcccaaattgcaggatacctgtatggggtgagtccgccggataaccctcaggtgaag
gagatccgctgcatcgtgatggtgccgcagtggggcactcaccagactgtgcacctgcct
ggccagctgccccagcatgagtacctcaaggagatggaaccactgggttggatccacact
cagcccaatgagtcccctcagctttcaccccaggatgtcaccacccacgctaaaatcatg
gctgacaatccatcttgggatggcgagaagaccattattatcacctgcagcttcaccccg
ggctcctgcacgctgaccgcctacaagctgacccccagtggctatgagtggggccgccag
aacacagacaagggcaacaaccccaagggctacctgccctcccattatgagagggtccag
atgctgctctcagaccgcttcctcggcttcttcatggtccctgctcagtcctcgtggaac
tacaactttatgggtgtccggcatgatcctaacatgaagtatgaactgcagctggcaaac
cccaaggagttctaccacgaggtgcacaggccctcccacttcctcaactttgcactcctg
caggagggcgaggtctactctgcagaccgggaggacctgtatgcctag
DBGET
integrated database retrieval system
