Sorex araneus (European shrew): 101542254
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Entry
101542254 CDS
T07854
Symbol
SCN11A
Name
(RefSeq) sodium channel protein type 11 subunit alpha
KO
K04843
voltage-gated sodium channel type XI alpha
Organism
sara
Sorex araneus (European shrew)
Brite
KEGG Orthology (KO) [BR:
sara00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sara04040
]
101542254 (SCN11A)
Ion channels [BR:
sara04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
101542254 (SCN11A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
Zn_ribbon_IFT122_C
Motif
Other DBs
NCBI-GeneID:
101542254
NCBI-ProteinID:
XP_004614619
LinkDB
All DBs
Position
Unknown
AA seq
1784 aa
AA seq
DB search
MDDRCYPVIFPDARNFRPFTADTLATIKKRIAIQKEKKKSKTLTSDEPVPRPQLDLKASR
KLPKLYGDIPRELVSKPLEDLDPFYRNHQTFMVLNKKRTIYRFSAKRALFIFGPFNPVRS
LAIRISVHALFSMFIICTVIINCVFMATAGVKESNSTDTNTAEYVFTGIYIFEALIKILA
RGFILDEFSFLRDPWNWLDSIVIATAVVSFFPYVSVNLSSLRTFRVLRALKAISVISGLK
VIVGALLRSVKKLVDVMILTLFCLSIFALVGQQFFMGNLSYKCVRNDCPPNTNNESCFEK
KKNSNEFRLCGTWMENVSACSDGFGCHPTACNPDYGYTNFDNFGWSFLAMFRLMTQDSWE
KLYQQTLRTSGLYSVFFFVLVIFLGSFYLINLTLAVVTMAYEEQNRNVAAETEAKEKMFQ
EAQQLLREEKEALIAMGIDRSSLNSLEASSFSPKKRKLFGSSKRKSFFLRKSRKDQAPGS
DSEEDSPTKPPLLEQTKRLSKNLSVEHPDELGDPFQRQRALSAVSILTITMQEQEKSEEP
CLPCGENLASKYLVWDCSPHWLAIKKPLKIVMTDPFTELAITICIIINTIFLAMEHYPME
KDFENMLNTGNLVFTGIFWAEMCLKIIALDPYHYFSRGWNVFDSIVALLSFADVMHTRIS
EKLHDRSVDRRSYIRSFRVLRVFKLAKSWPTLNTLIKIIGHSVGALGNLTVVLTIVVFIF
SVVSMQLFGFHFNSTRTASSSCVNALPVSPQKRRWHMGNFFHSFLVVFRILCGEWIENMW
ECMQETDDTLCIIVFLSIMVIGKLVVLNLFIALLLNSFSNEEKDGNSEGDAKKTKVQLAL
DRFYRAFRFVINTLQHFCCQYCRRKKLSKQKEVTDVLSTETKEIIPLVIEMKGGSCDEFG
LQTSASKTLNVGQDRIWLAPLAEEEYDFDNLPKINVPETEKKVYAGPQETKSTNSPAVPT
VEIVVFSDDTSPSMQNPQKNFDAISLLSDCSTIDPQNAMPVSDIVPKKQPGRCLPKGLRF
CFPCCVVDKRKSPWMLWWNLRKTCYQIVKHSWFESFIIFVILLSSGALVFEDDFLETRPQ
IKELLNYTDKFFTFIFILEMGLKWVAFGFRKYFTNAWCWLDFIIVIVSVTTLIDAGILRP
FRILRALRPLRALSQFEGMKVVVYALMGAIPAILNVLLVCLIFWLIFCILGINFFSGKFG
KCVNETDGNSDLSDSIVTNKSECESRNLSWTNLKVNFDNVGMAYLSLLQVATFKGWLDIM
DAAVDSREQEQQPSFEENIYMYIYFVVFIIFGSFFTLNLFIGVIIDNFNQQQKKISGQDI
FLTEEQKKYYNAMKKLGSKKPQKPIPRPLNKCQGFVFDIVTSQVFDIIIISLIILNMICM
MVEYHGQDKDMKYTLDLLNTAFVVIFTIECLIKIFALRQYYFTNGWNLFDCVVVVLSIVS
TLISALESHQQNIPFPPTLFRIVRLARIGRILRLVRAARGIRTLLFALMMSLPSLFNIGL
LLFLVMFIYAIFGMKCFSKVEPNAGIDDIFNFKTFVHSMLCLFQITTSAGWDTLLSPMLQ
PKMNSSNSQSKENHLPTIAITYFVSYIIISFLIVVNMYIAVILENFNTATEESEDPLGED
DFDIFYEVWEKFDPEATQFISYSALSDFADALPEPLRVPKPNRFQFLIMDLPMVNGDRLH
CMDILFAFTTRVLGNSSGLDSMKAMMEEKFMEANPLKKLYEPIVTTTKRMEEERCASIIQ
KAFRKHMIRMTRCLLEDRPHEILQTLYDGDLPNAGVAEGKVHYD
NT seq
5355 nt
NT seq
+upstream
nt +downstream
nt
atggatgacagatgctacccagtgatctttccagatgctcggaatttccgccccttcact
gctgacactctggctaccattaaaaagcggattgccatccaaaaggagaaaaagaagtcc
aaaactctgacgtcggatgaacccgtgcctcggcctcagcttgatttgaaggcctccagg
aagttgcccaaactctatggggacattccccgtgagctggtatcaaagcccttggaagac
ttagacccattctacagaaatcatcagacatttatggtgttgaataaaaagaggacaatc
taccgcttcagtgccaagcgtgccttgttcatttttgggcctttcaatccagttcgaagt
ttagccattagaatctccgttcacgccctgttcagcatgttcatcatctgcacggtcata
atcaactgtgtgttcatggccacggctggggtgaaggagagcaacagcacagataccaac
actgccgagtatgtcttcactgggatttatatttttgaagctttgataaaaatattggca
agaggtttcattctggacgagttttctttccttcgagatccgtggaattggctggactcc
atagtcattgcaacagcggttgtgtcattttttccatacgtctcagtaaacctgtcatct
ctgcgcacctttcgagtgttacgagccttaaaagcaatttctgtaatctcaggtctgaaa
gttattgttggggccctgctgcgctctgtgaagaagcttgttgacgtgatgatcctgact
cttttttgcctcagcatctttgccctggtagggcaacagttcttcatgggaaatctaagc
tacaaatgtgtcaggaatgactgtcctccgaacaccaacaatgaatcttgctttgaaaag
aaaaaaaattccaatgaattcagactgtgtggcacctggatggaaaatgtcagtgcctgt
tctgatggatttgggtgccatcctactgcctgcaatccagactatggctatacgaatttt
gacaattttggctggtcctttcttgccatgttcagacttatgacccaagattcctgggag
aaactttatcaacagaccttgcggacctctgggctctactcggtcttcttctttgtcttg
gtcatcttcctgggctccttctatctgattaacttaaccctggctgtggtgactatggct
tatgaggagcagaacaggaacgtggcggctgaaacagaggccaaggagaagatgttccag
gaagcccagcagctattaagggaagagaaagaggctctgattgccatgggaattgaccga
agttcacttaattcccttgaagcatcatctttttccccaaagaagagaaagctgtttggt
agtagtaaaaggaaatccttctttttgagaaagtctaggaaagaccaggctccaggatca
gattctgaagaagattctccaacaaagccacctcttcttgagcaaacaaaaagactgtcc
aagaatctgtcagtggagcaccctgatgagcttggagaccccttccaaaggcagcgggct
ctgagtgctgtcagtatcctcaccatcaccatgcaagaacaagaaaaatcagaggagcct
tgcctcccatgtggggaaaacctggcatccaaatacctcgtgtgggactgtagccctcac
tggttggccattaagaagcccctaaaaattgtgatgactgacccctttactgaactggcc
atcacaatctgcatcataatcaacacgatcttcttggctatggagcattacccaatggag
aaggattttgaaaatatgttgaacacagggaatttggttttcaccgggatcttttgggca
gaaatgtgcctaaaaattattgctctcgatccctatcactactttagtcgaggctggaat
gtttttgacagcattgttgctcttctgagttttgctgatgtgatgcacactcggatttcg
gagaagttgcatgatcgaagtgtagatcgaaggtcctatattcgttcttttagagtgctg
agggtcttcaagttagccaagtcctggccaactttaaacacactgattaaaattatcggc
cactcagtcggagctcttggaaacctcactgtggtcctgaccatcgtggtcttcatcttc
tcagtggtcagcatgcagctttttggttttcactttaattccacaagaactgcttcaagc
tcctgtgtcaatgcacttccagtctcaccacagaaacgacgctggcacatggggaatttc
tttcattcctttctggtggtgttccgcatcctctgcggggaatggattgaaaacatgtgg
gaatgtatgcaggaaacggatgacacactgtgcatcattgtctttctctccatcatggtg
ataggcaaacttgtggtactcaacctcttcatcgcattgctgctcaattccttcagcaat
gaggagaaagatggaaactcagaaggagatgccaagaaaaccaaagttcaattagcccta
gatcggttctaccgggcctttcgttttgtgataaatactcttcaacacttttgttgccag
tattgtaggaggaaaaagctatcaaaacaaaaagaggtgacagatgtgctttccacagaa
accaaagaaatcattcccttggtcatagagatgaaagggggttcatgtgatgaatttgga
cttcaaacttctgcatcaaagaccttgaatgttggccaagatcgaatttggttggctcca
cttgcagaggaagaatatgattttgacaatcttcccaaaattaatgtacccgagactgag
aaaaaggtttatgcaggcccccaggagaccaagagcacaaacagtccagcagttccaact
gtagaaattgttgtgttttctgatgatacctctccttcaatgcagaatccccaaaagaat
tttgatgccatcagcttactttcagattgtagcaccattgatccacagaatgccatgccg
gtatctgacattgttcccaaaaagcaacctgggagatgtttgcccaaaggtctgcgtttc
tgctttccatgctgtgttgtggacaagagaaagtccccctggatgctctggtggaacctg
cggaaaacctgctaccaaatagtaaaacacagttggtttgagagctttattatctttgtg
attcttctgagcagtggggcactggtatttgaagatgatttcctggaaacgagacctcaa
attaaagaattacttaattacaccgacaaatttttcacattcatttttatcctggagatg
ggtttgaagtgggtggcctttggatttaggaagtatttcaccaatgcctggtgctggctg
gatttcatcattgtgattgtctctgtgacaacactcatcgatgcaggaatcttgagacct
ttccggattctccgagcactgcggcccctcagagccctctcccagttcgaagggatgaag
gtagtggtttatgcactcatgggcgccatacctgccattctgaacgttttgcttgtctgc
ctcattttctggctcatcttttgtatcctgggcataaactttttttctgggaaatttgga
aaatgcgttaatgagacagatgggaactcagatctcagtgatagcattgtgacaaacaaa
agtgaatgtgaaagcagaaatttgtcctggaccaacctcaaagtcaattttgacaatgta
ggaatggcgtacctttccctgctgcaggtggcaacattcaagggttggttggacattatg
gatgcagcagttgattctagagagcaagaacagcagccaagctttgaggagaatatatac
atgtacatttactttgtcgtttttatcatctttggctcattcttcactctgaatctcttt
attggtgttattattgacaacttcaaccaacaacaaaaaaagataagtggccaagacatt
tttttgacagaagaacagaagaaatactataatgcaatgaaaaaattaggatccaaaaaa
cctcaaaagcctattccaagacctctgaacaaatgccagggtttcgtgtttgacatagtc
acaagccaggtctttgacatcatcatcatcagcctcattattctcaacatgatttgcatg
atggttgaatatcatggacaagataaagacatgaaatacacgcttgatcttctcaacaca
gcctttgtggtcatctttacaattgagtgtctcatcaaaatctttgctttgaggcagtac
tacttcaccaatggctggaatttatttgattgtgtggtcgtggtcctttctattgttagt
acactcatttctgccttggaaagtcatcaacaaaacattcctttccctccaacactcttc
agaattgtgcgcttggctcggattggccgaattctgagacttgttcgggcagcacgagga
attcggactctcctttttgctctgatgatgtcccttccctccctattcaacatcggtctt
ctgctctttctggtcatgtttatttatgccatttttggtatgaaatgttttagcaaagta
gaaccaaacgctgggattgatgacatattcaacttcaaaacttttgtccacagcatgctg
tgtctctttcagatcaccacatccgcaggctgggatactcttctcagccccatgttgcaa
ccaaaaatgaactcctctaactctcagtcaaaggagaatcacctccctaccatagccata
acgtactttgtaagttacatcatcatctcctttctcatcgttgtcaacatgtacattgct
gtgattttagagaacttcaacacagccactgaagaaagtgaggaccctttaggggaagat
gactttgatatattctatgaggtctgggaaaagtttgacccagaagcaacacagtttatc
agttattctgccctttctgattttgctgatgcccttcctgagcctttgcgtgtgcccaaa
ccaaatagatttcaattcctaataatggacttgcccatggttaatggagatcgactccac
tgcatggatatcctctttgcttttaccacgagagtgcttggtaactccagtggcctggat
agcatgaaggcaatgatggaagagaagtttatggaagccaaccctttgaagaagttgtat
gagcccattgtcaccaccacaaagagaatggaagaggagagatgtgcttctatcattcaa
aaggcctttcgaaagcacatgatcaggatgacgaggtgtctcttagaagataggcctcat
gaaatactccagactctttacgatggagatttgcccaatgctggggtggccgagggcaaa
gtccactatgactga
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integrated database retrieval system
