Sorex araneus (European shrew): 101546201
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Entry
101546201 CDS
T07854
Symbol
LIG3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
sara
Sorex araneus (European shrew)
Pathway
sara03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sara00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
101546201 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sara03400
]
101546201 (LIG3)
Enzymes [BR:
sara01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
101546201 (LIG3)
DNA repair and recombination proteins [BR:
sara03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
101546201 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
FMP23
mRNA_cap_enzyme
FAD_binding_1
Motif
Other DBs
NCBI-GeneID:
101546201
NCBI-ProteinID:
XP_004608634
LinkDB
All DBs
Position
Unknown
AA seq
1001 aa
AA seq
DB search
MTLTFKILFLPALRALGQKELCLLRKQHHRPDARQFRLWAETGLPHGCCLSKRRKPGLLS
QGANLRPRDTQPGFLPRSHVGLCSGPWEMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRI
GKVVPNPFSESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEENEKEQINQ
HIADLSAKATGTPKKKAVVQAKLTATGQVTSPAKGTSFVTNTNPRKFSGFSAKPNNSGEG
VVSPAPSTSLSASKCDPKHKDCLLREFRKLCAMVAENPSYNTKTQIIQDFLRKGSAGDGF
HGDVYLTVKLLLPGVIKSVYNLNDKQIVKLFSRIFNCNPDDMARDLEQGDVSETIRVFFE
QSKSFPPAAKSLLTIQEVDQFLQHLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHD
LKMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLRNQQENEPGQRRVLSVQASLMTPV
QPMLAEACKSIEYAMKKCPNGMFSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHF
KDYIPRAFPGGHSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFN
DVSLMDRPLWERRKFLHDNMVEIPNRIMFSEMKQVTKGSDLADMINRVIREGLEGLVLKD
VKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPHSQ
KWCTVTKCAGGHDDATLARLQKELDMVKISKDPSKIPSWLKINKIYYPDFIVPDPKKAAV
WEITGAEFSKSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKERADFTVV
AGDEGSSTTGGSSGENEGASGPPREAPSAKKAGEKLSSPSSKGGDKWNAKNGPVNASEQQ
AKKSPLRVGQKRKAEGAETPGQTKVLLDIFTGVRLYLPPSTPDFSRLRRYFVAFDGDLVQ
EFDVASATHALGSRDQSPDAQQVSPEWIWACIRKRRLVAPC
NT seq
3006 nt
NT seq
+upstream
nt +downstream
nt
atgactctgactttcaagatcctcttcctaccagccctccgtgccctcggccaaaaggaa
ctgtgcctgctcaggaaacagcatcaccggcctgacgccaggcagttccgtctgtgggca
gagacaggtctgccccatgggtgctgcctctccaagaggaggaagcctggtctgttgtcc
cagggagcaaatctaagaccccgagacacacagccgggtttcttgcccagatcgcatgtg
ggactgtgcagtggcccctgggagatggccgagcaacgattctgtgtggactatgccaag
cggggcacagccggctgcaagaaatgcaaagagaagattgtgaaaggtgtatgccggatt
ggcaaggtggtccccaaccccttctcagagtctgggggtgatatgaaagagtggtaccac
attaaatgcatgtttgagaaactggagcgggcccgggccaccaccaaaaaaattgaagac
ctcacagaattggaaggctgggaagagctggaagagaatgaaaaggaacagataaatcag
catattgcagatctgtcagctaaggcaacaggcacaccgaagaagaaagctgttgttcag
gcaaagttgacagccactggccaagtgacatctccagcaaaaggcacctcgtttgtcacc
aataccaatccccggaaattttctggtttttcagccaagcccaacaactcaggggaaggc
gtcgtcagcccagccccttcgaccagtctgtctgccagcaagtgtgaccccaagcataag
gactgtctgctccgcgagtttcgcaagctgtgtgccatggtggccgagaacccgagctac
aacaccaagacccagatcatccaggacttcctgaggaaaggctcagcaggagatggattc
cacggcgacgtgtacctcactgtgaagctgctgctgccaggggttattaagagcgtctat
aacttgaatgataagcagatcgtgaagctcttcagccgcatttttaattgcaacccggat
gacatggcacgagacctcgagcagggtgatgtgtcggagacgatcagagtcttctttgag
caaagcaagtccttcccgcccgctgccaagagcctcctcacaatccaggaagtggaccag
ttcctccagcatctgtccaagctcacgaaggaggacgagcagcagcaggccctgcaggac
atcgcctcccggtgtaccgccaacgaccttaagtgcatcatcaggctgatcaaacatgat
ctgaagatgaactcaggcgcaaagcatgtgttagatgccctcgaccccaacgcctacgaa
gctttcaaagcttcccgcaacttacaggatgtggtggagagggtgctccgcaaccagcag
gagaacgagccaggccagcgacgagtcctgagtgtccaggcctcgctgatgacccccgtg
cagcccatgctggccgaggcctgcaaatccatcgagtatgccatgaagaagtgtcccaac
ggcatgttttcggagatcaagtacgacggggagcgagtccaggtgcataagaacggggac
cacttcagctacttcagtcgcagcctgaagcctgtcctgcctcacaaggtggcccacttc
aaggactacatcccccgggcgttccccggaggccacagcatgatcttggactcggaggtg
ctccttattgacaacaagacaggcaaacctctgcccttcgggactctgggtgtgcacaag
aaagctgccttccaggatgctaacgtttgcctgtttgtttttgattgtatctacttcaat
gatgtcagcttgatggacaggcctctttgggagcgacgtaagttccttcatgacaacatg
gttgaaattcccaaccggatcatgttctcagaaatgaagcaagtcacgaaaggctccgat
ttggctgacatgatcaaccgggtgatccgggagggccttgaagggctggtgctgaaggac
gtgaagggtacatatgagcctggaaagcggcattggctgaaagtgaagaaagactatttg
aacgagggggccatggctgacacagctgacctggtggtcctcggggccttctatgggcaa
gggagcaaaggtggcatgatgtccatcttcctcatgggctgctatgacccacacagccag
aagtggtgcacagtcaccaagtgtgccggaggccacgacgatgccacactcgcccgcctg
cagaaggagctggacatggtgaagatcagcaaggatcccagcaagatacccagctggctg
aaaatcaacaagatctactaccctgacttcatcgtcccagatccaaagaaagctgccgtg
tgggagatcacaggggctgaattctccaaatctgaggctcacaccgccgatggcatctcc
attcgattccctcgctgcacccgcatccgtgacgacaaggactggaaatctgccactaac
ctcccccaactcaaggaactgtaccagctgtcgaaggagagggccgacttcaccgtggtg
gcaggagacgagggaagctccacgaccggaggcagcagtggggagaacgagggtgcctcc
gggccccctcgcgaggcccccagtgccaagaaggcaggagagaagctgagcagccccagc
agcaaaggcggtgacaagtggaatgcaaaaaatggccctgtgaatgccagtgagcagcag
gccaagaagtctcccctgcgggtcggacagaagaggaaagcagaaggggccgagaccccg
ggccagacaaaggtgctgctggacatcttcactggcgtgcggctctacctgccgccctct
acgcccgacttcagccgtctcagacgctactttgtggctttcgatggggacctggtacag
gaatttgacgtggcttcagccacacatgcgctggggagcagggaccagagcccggatgcc
cagcaggtctccccagagtggatttgggcatgtatccggaaacggagactggtagccccc
tgctag
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integrated database retrieval system
