Sorex araneus (European shrew): 101549979
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Entry
101549979 CDS
T07854
Symbol
SKIV2L2
Name
(RefSeq) superkiller viralicidic activity 2-like 2 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
sara
Sorex araneus (European shrew)
Pathway
sara03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sara00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101549979 (SKIV2L2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sara03019
]
101549979 (SKIV2L2)
03041 Spliceosome [BR:
sara03041
]
101549979 (SKIV2L2)
03009 Ribosome biogenesis [BR:
sara03009
]
101549979 (SKIV2L2)
03016 Transfer RNA biogenesis [BR:
sara03016
]
101549979 (SKIV2L2)
Enzymes [BR:
sara01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101549979 (SKIV2L2)
Messenger RNA biogenesis [BR:
sara03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
101549979 (SKIV2L2)
Spliceosome [BR:
sara03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
101549979 (SKIV2L2)
Complex C
U4/U6.U5 tri-SnRNP related factors
101549979 (SKIV2L2)
Ribosome biogenesis [BR:
sara03009
]
Eukaryotic type
Pre-60S particles
Helicases
101549979 (SKIV2L2)
Transfer RNA biogenesis [BR:
sara03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
101549979 (SKIV2L2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
AAA_19
Motif
Other DBs
NCBI-GeneID:
101549979
NCBI-ProteinID:
XP_004608488
LinkDB
All DBs
Position
Unknown
AA seq
1042 aa
AA seq
DB search
MADAFGDELFSVFEDDSTAAAGTKKDKEKEKTKWKGPPGSAEKAGKRLDDKLQSESTTAG
KTKRDADFEGTDEPIFGKKPRVEETVTEDISLADLMPRVKVQSVETVEGCTHEVALPADE
DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR
EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS
EVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLH
KQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGD
QKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMV
EEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALF
ATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVD
EKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPG
VVEKVKNSEEQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLV
KVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKP
DEKGEMQVVPVLVHLLSAISSVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGVPLLDPI
DDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELK
KARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDL
SAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEESYLS
SFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELE
NKFAEGITKIKRDIVFAASLYL
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgctttcggagatgagctcttcagcgtgttcgaagacgactcgacggctgcg
gccgggaccaaaaaggacaaggaaaaagagaagacaaagtggaaggggccgccgggctct
gcggaaaaggcaggaaaacgtcttgatgataaattacagtcagaatcgactactgctgga
aaaaccaagagagatgcagattttgaaggcacagatgaacccatttttggaaagaagccc
cgagtagaagagacagtaactgaagatataagtttggcagacttgatgcccagagtcaag
gtgcagtctgttgaaactgttgaaggctgcacacatgaggttgcacttcctgcagatgaa
gattatttacctctgaaaccccgagttgggaaagctgcgaaggaatacccattcattctt
gatgcttttcaaagagaagcaattcagtgtgttgataataatcagtctgttttggtgtct
gcacatacatcagcaggaaaaactgtatgtgctgagtatgccattgcattggccttaaga
gaaaaacagcgtgtaatatttaccagtccaattaaagctctgagtaaccaaaagtatcgt
gaaatgtatgaagaatttcaagatgtgggtctgatgactggagatgttactattaatcct
acagcatcttgtcttgttatgaccacagagattttgagaagtatgctctacagaggttct
gaagttatgcgagaagttgcttgggtcatatttgatgaaattcattacatgagagattca
gagcgtggtgtggtatgggaagaaactattattttgcttcctgataatgtccactatgtc
tttctttcggctactattccaaatgctcgtcaatttgctgaatggatttgccatttacat
aaacagccatgtcatgtaatctacacagattaccggcctactccattgcaacactacatt
tttccagcagggggagatggcttgcatcttgtggttgatgaaaatggtgacttcagggag
gataatttcaatactgcaatgcaagtacttcgagatgcgggtgatttggcaaaaggagat
cagaagggacggaaaggaggaacaaaagggccatcaaatgtattcaagattgtgaagatg
attatggaaaggaattttcaaccagtgatcattttcagttttagtaagaaagattgtgaa
gcctatgcacttcagatgaccaaattagatttcaatacagatgaggaaaagaagatggtt
gaagaagtattcagtaatgcaattgactgcttgtctgatgaagataaaaagctccctcag
gttgaacatgtacttcctcttctcaagcggggaattggtattcaccatggtggtttactt
cctattttgaaagaaactatagaaattctcttttctgaaggattgataaaggccttgttt
gctacagagacttttgctatgggcattaatatgccagcaagaactgtcttatttacaaat
gcccgaaaatttgatggaaaagacttccgatggatttcctctggtgaatacattcagatg
tctggtcgtgctggaaggaggggaatggatgatagaggaattgtaattcttatggtggat
gaaaagatgagcccaacgattggaaaacaactgcttaagggctccgctgatcctctaaat
agtgcttttcatttgacctacaacatggtgttgaacttactccgtgtagaggaaattaat
cctgagtacatgttggaaaagtccttttaccaattccagcattatagagcaattccagga
gtggtcgagaaggtaaagaattctgaagaacagtataataaaatagtaataccaaatgaa
gagagtgtagttatctattataaaattagacagcagctggccaaacttggtaaagaaatt
gaagaatatattcacaaacctaaatactgcttaccatttctgcaaccaggtcgtctggta
aaggtaaagaatgaaggagatgattttggctggggagtagtagtaaatttctccaaaaag
tcaaatgttaagcctaattctggtgaactggatcctctgtatgtagttgaagtacttctg
cgctgtagcaaagagagcctgaaaaattcagccactgaggcagcaaaaccagctaaacct
gatgagaaaggagaaatgcaggttgttccagttttggtacatcttctgtctgctattagc
agtgttagactttacattcctaaagaccttcgaccagtggacaatagacagagcgttcta
aaatcaatacaggaagttcaaaaacgttttcctgacggtgttcccttactagaccctatt
gatgatatgggcattcaagatcaagggctgaaaaaagtcatccagaaagtagaagctttt
gagcatcgaatgtattctcacccacttcataatgatccaaatttagaaactgtgtataca
ctttgtgaaaaaaaggcacagattgcaatagatattaaatctgcaaagcgagaacttaag
aaagcaagaactgttttgcaaatggatgaactcaaatgtcgcaaacgtgttttaaggaga
ttggggtttgctacttcttctgatgtcatagagatgaaaggacgagtggcttgtgagatt
agcagtgctgatgagctccttctaactgagatgatgtttaatggccttttcaatgaccta
tctgctgaacaggcaacagcgctactaagctgttttgtgtttcaagagaattcaagtgag
atgcccaaattgacagagcagttagcaggaccgcttcgtcaaatgcaggaatgtgctaaa
agaattgcaaaagtttcagcagaagccaaattggaaattgatgaggaaagttatctaagc
tcttttaagcctcacctaatggatgtagtttatacttgggcaacaggagctacttttgct
catatctgcaaaatgacagatgtttttgaaggtagtataattcgttgtatgaggcgccta
gaagaacttcttcgacagatgtgtcaagctgcaaaagctattgggaacactgaactggaa
aataaatttgcagaaggaatcaccaaaatcaagagagatattgtgtttgctgccagcctc
tacttgtaa
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integrated database retrieval system
