Sorex araneus (European shrew): 101551340
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Entry
101551340 CDS
T07854
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
sara
Sorex araneus (European shrew)
Pathway
sara03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sara00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101551340 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sara03019
]
101551340 (EDC4)
Messenger RNA biogenesis [BR:
sara03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101551340 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
101551340 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_Prp19
Beta-prop_HPS5
DUF445
WDR55
Motif
Other DBs
NCBI-GeneID:
101551340
NCBI-ProteinID:
XP_004600644
LinkDB
All DBs
Position
Unknown
AA seq
1336 aa
AA seq
DB search
MPPLSLQEKQVICLSGDDSSTCIGILAKEVEIVASSDSSISSKARGSNKVKIQPVAKYDW
EQKYYYGNLIAVSNSFLAYAIRAANNGSAMVRVISVSTSERTLLKGFTGSVADLAFAHLN
SPQLACLDEAGNLFVWRLALVNCKIQEEILVHIRQPEGTPLNHFRRIIWCPFIPEESEDC
CEESSPTVALLHEDRAEVWDLDMLRSNHSTWPVDVSQIKQGFIVVKGHSTCLSEGALSPD
GTVLATASHDGFVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKKQDPDVPFWR
FLITGADQNRELKMWCTVSWTCLQTIRFSPDIFSSVSVPPSLKVCLDLSAEYLILSDVQR
KVLYVMELLQNQEEGRACFSSISEFLLTHPVLSFGIQVVSRCRLRHTEVLPAEEENDSLS
TDGPHGANPTEAAAGVLIKLFCVHTKALQDVQIRFQPQLNPDVVAPLSTHPAHEDFAFGE
SRPELGSEGLNSGAHGSQPDLRRLVELPAPADFLSLSSEAKPKLMTPDAFMTPSASLPQG
TAPLLRVPQMAVSPSGSSSSSSSSSLTAVSAMSSTSTADSALPRPPEELALSPKLQLEGG
LSVSSGSLQGSPRGLLPGLLPGPADKLPPKGPGQVPTAASALSLELQEVEPLGLPQASPS
RTRSPDVISSASTALSQDIPEIASEALPRGFGASAPEGLEPDSMASAASALHLLSPRPRP
GPELGPQLGLDGGPGDGDRHSTPSLLEAALTQEATGADSQIWPTAPDITRETGSSLGESP
RNGLQEKHKSLAFHRPPYHLLQQHDSQDASAEQSDHDDEVASLASVAGGFGPKVPTPRLP
AKDWKTKGSPRGSPKLKRKGKKEDGDPAVGSRHAEHQVVEPPEDWPALIWQQQRELVGLR
HNQEELLQRLCAQLEGLQSTVTGHVERALESRHEQEQRRLERALAEGQQRGGQLQEQLTQ
QLSQALSSAVAGRLERSIRDEIKKTVPPCVSRSLEPVAGQLSSSVATRLTAVEGSMKESI
SKLLKSKNLTDAIARAAADTLQGPMQAAYREAFQSVVLPAFEKSCQAMFQQINDSFRLGT
QEYLQQLESHMKSRKAREQEAREPVLAQLRGLVSTLQGATEQMAATVSSSVRAEVQHQLH
LAVGSLQESILAQVQRIVKGEVSVALKEQQAAVTSSIMQAMRSAAGTPVPAAHIDCQAQQ
AHILQLLQQGNLNQAFQQALTAADLNLVLYVCETVDPGQVFGQPSCPLSQPVLLSLIQQL
ASDLGTRTDLKLSYLEEAVMHLDHSDPITRDHMGSVMAQVRQKLFQFLQAEPHNSLGKVA
RRLSLMLHGLVTPSLP
NT seq
4011 nt
NT seq
+upstream
nt +downstream
nt
atgccacctctcagcctgcaggagaagcaggtcatctgcctgtcaggagatgacagttcg
acctgtatcgggatcttggctaaagaggtggagattgtggccagcagtgactcgagcatc
tcaagcaaggctcgcgggagcaacaaggtgaaaatccagcccgtcgccaagtacgactgg
gaacagaagtactactatggcaacctgattgctgtgtccaactccttcttggcttacgcc
attcgggctgccaacaatggctccgcgatggtgcgggtgatcagcgtgagcacttcggag
cggactctgctcaagggcttcacgggcagcgtggccgatctggccttcgcacacctcaac
tcgccacagctggcctgcctggacgaggccggcaatctcttcgtgtggcgcttggccctg
gttaattgcaagattcaggaagagatcttagtccacatccggcagccagagggcacgccg
ctgaaccacttccgcaggattatctggtgccccttcatccccgaggagagtgaggactgc
tgtgaggagagcagccctacggtggccctgctgcatgaagaccgggctgaggtgtgggac
ctggacatgctccgctccaaccacagcacctggccagtcgacgtgagccagatcaaacag
ggtttcatcgtggtcaaaggccacagcacatgtctgagtgagggggccctctccccagac
gggactgtcctggccaccgcgagtcacgatggctttgtcaagttctggcagatctacatt
gagggccaggatgagcccaggtgtctgcatgagtggaagcctcatgacgggcgccccctc
tcctgcctcctcttctgtgacaaccacaagaaacaggatcctgacgtccctttctggagg
ttcctcatcaccggtgctgaccagaaccgagagcttaagatgtggtgcacggtgtcctgg
acctgcctgcagaccatccgcttctccccggatatcttcagctccgtgagcgtgcccccc
agcctcaaggtttgcctggacctctctgcggagtacctgattctcagcgatgtgcagcgg
aaggtcctgtacgtgatggagctgctgcagaaccaggaggagggccgggcctgcttcagc
tccatctccgagttcctgctcacccaccccgtgctcagcttcggcatccaggttgtgagt
cgctgccggctgcggcacacggaggtgctgcctgccgaggaggagaacgacagcctcagc
actgatgggccccacggagctaatcccacggaggccgcggccggcgtgctcatcaagctc
ttctgcgtgcatacgaaggcattgcaagatgtgcagatccgcttccagccgcagctgaac
cctgacgtggtggcccccttgtccacccaccctgcccacgaggactttgccttcggggag
tcccggcccgagctgggctccgagggcctgaactccggcgcgcacggctcgcagcccgac
ctccggcgcctggtggagctgccggctcccgccgacttcctcagcctgagcagcgaggcc
aagcccaagctgatgacgcccgacgccttcatgacacccagcgcctccctgccgcagggc
acagccccccttctccgcgtcccccagatggcggtgtcccccagcggcagctccagctcc
agctccagctcgtctctcacagccgtgtctgccatgagcagcacctccacggcggactct
gccttgcccaggccccccgaggagctggccctgagcccgaaactgcagcttgaaggtggc
ctgagcgtgagcagcggcagcctgcagggcagcccccgcggcctcctgcccggcctgctc
ccaggcccggccgacaaactccctcccaaggggccgggccaggtacctactgctgcctct
gcactgtccctggagctacaggaagtggagcccctggggctcccccaggcttctcccagc
cgcacccgttcccccgatgttatctcctcagcttccaccgccctgtcccaggacatcccc
gagattgcgtctgaggccctcccccgtggctttggcgcctctgcgcctgagggcctggag
ccggacagtatggcctcagcggcctcagcactccacctcctgtcccctcggccccgcccg
gggcccgagcttggtcctcagcttggcctggatggaggcccgggggacggtgatcggcat
agcactccctccctcctggaggcagccttgacccaggaggccacaggcgctgacagtcag
atctggcccacggcccccgacatcactcgtgagaccggcagcagccttggagaaagcccc
aggaacggactccaggagaagcacaagagcctggccttccaccggcctccctaccacctg
ctgcagcagcacgacagccaggacgccagtgccgagcagagcgaccatgatgacgaggtg
gccagcctcgcctctgtagcagggggcttcggccccaaggtccccacaccacggctgccc
gccaaggactggaagaccaagggatcccctcggggctccccaaagcttaaaaggaagggc
aagaaggaggacggggatccggctgtggggtcccggcacgcagagcaccaggtggtggaa
ccccctgaggactggccggcactgatctggcaacagcagagagagctggtggggctgcgg
cacaaccaggaggagctgctgcagcgtctgtgcgcccagctggaagggctgcagagcacc
gtcacgggccacgtcgagcgagccctcgagtcccggcatgagcaggagcagcggcggctg
gagcgggcgctggccgaggggcagcagcggggcgggcagctgcaggaacagctgacacag
cagctgtcccaggctctgtcttcggctgtggccgggcggctggagcgcagcatccgggat
gagatcaagaagacggtgcctccatgtgtctctcggagcctggagcctgtggcaggccag
ctgagcagttcagtggccaccaggctcacagctgtggagggcagcatgaaggagagtatc
tcgaagctgctcaagtccaagaacctgacagacgccatcgcccgagcagctgcagacacg
ttacaggggccgatgcaggctgcctaccgggaagccttccagagcgtggtgctgcccgcc
ttcgagaagagctgccaggccatgttccagcagatcaacgacagcttccggctgggcacc
caggagtacttgcagcagctcgagagccacatgaagagccggaaggcccgggagcaggag
gcgcgtgagccagtgttggcccagctgcgagggcttgtcagcaccctgcagggcgccacc
gagcagatggcagccaccgtgtccagcagcgttcgggctgaggtgcagcaccagctgcac
ttggctgtgggcagcctgcaggagtccattctggcgcaggtgcagcgcattgtcaagggc
gaggtgagcgtggcgctcaaggagcagcaggcagcagtcacgtccagcatcatgcaggcc
atgcgctcggccgctggcacaccagttcctgccgctcacattgactgccaggcccagcaa
gcccacatcctgcagctgctgcagcagggcaacctcaaccaggccttccaacaggctctg
acagctgccgacctgaacctggtgctgtacgtgtgtgaaactgtggacccaggccaggtc
tttggacaaccgtcctgtcccctctcccagcccgtcctgctctccctcattcagcagctg
gcctctgacctaggcactagaactgacctcaagctcagctacctggaagaggctgtgatg
cacctggaccacagtgaccccatcactcgggaccacatgggctccgtcatggcccaggtg
cgccagaagcttttccagttcctgcaggctgagccacacaattcccttggcaaagtggcc
cggcggctcagcctcatgctgcacggcctcgtgacgcccagcctcccttaa
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integrated database retrieval system
