Sorex araneus (European shrew): 101554338
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Entry
101554338 CDS
T07854
Symbol
PDCD11
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
sara
Sorex araneus (European shrew)
Brite
KEGG Orthology (KO) [BR:
sara00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sara03009
]
101554338 (PDCD11)
Ribosome biogenesis [BR:
sara03009
]
Eukaryotic type
90S particles
Other 90S particles
101554338 (PDCD11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
S1_RRP5
S1
Spt6_S1
OB_RRP5_4th
OB_RRP5
HAT_Syf1_CNRKL1_N
TPR_14
HAT_PRP39_C
HAT_PRP39_N
HAT_Syf1_CNRKL1_C
TPR_19
Suf
ARM_TT21
TPR_CcmH_CycH
TPR_12
TPR_6
NRDE-2
TPR_2
TPR_15
DUF7017
DUF2110
Motif
Other DBs
NCBI-GeneID:
101554338
NCBI-ProteinID:
XP_012789893
LinkDB
All DBs
Position
Unknown
AA seq
1758 aa
AA seq
DB search
MADFEESFPRGGTRKTPKSEKAPQRSVEQDNLFDVSHEEESSTKRKKSQKGPAQAKKLKI
EKRESSKPVKEKFELLGVKVLCEGMRILGCVKEVKQLELVVSLPNGLQGFVQVTEICDAY
TKKLSEQMAQEEPLTEVASLPELFSPGMLVRCVVSSLGTTEKGKQTVKLSLNPKKVNDVL
SADALKPGMLLTGTVSSLEDHGYLVDIGVAGARAFLPLKKVQEKSKGAKLQVGQYLNCTI
EEVKGSGGVVRLSVGHAEGSAALATEEQNWTLNNLLPGLVVRAQVQKVTPLGLTLKFLSL
FTGLVDFMHLDPKKAGTYFSNQTVRACVLAVHPRTREVRLSLRPVFLQSGRPLSRLSCQN
LGAVLEDVPVQGFFHKAGATFKLKDGSLAYARLGQLSDSKKVFNPEAFKPGNLHKCRVVD
YSPMDELAFLSLRTSVIEAQYLTYSDIRPGELVKGTVLSMKPFGMLVELSKQIRGLVPSL
HLADVLMKNPEKKYKVGKEVKCRVLLCDPDAKKLLLTLKKTLVQSKLPAITCYADAKPRL
QTHGFILRVKNYGCIVKFYNDVQGLVPRHELSAEYIPDPERVFYPGQVVKVAVLNCEPAK
ERMLLSLRTPGDPNKEPEGPSQKKNQSVSTGQLVDVKVLEKTPDGLEVAVLPHNIRGFLP
MSHLSDHVSNGPLLHHWLQEGDTLHKVLCLSQTEGHILLCRKPALVSTVEGGQNPKSFAE
IHPGMLLIGFVKCIKDYGVFVQFPSGLSGLAPKALMSDKFVTTTSDHFVEGQTVVAKVTH
VDEEKQRMLLSLRLSDCSLGDRAATSLLLLTQCLEEQQGVRCLMGNRDSVLIQTLAQMAP
GMVLDLEVQEVLEDGSVVFSEGPVAGLVLRASRYHRAGQDVESGQKKKAVVLSVDLLKLE
VHVSLLPDLLNQKAKKLKKGSRHQAVVQHLEESFAVASLAGSGHLAAFSLTSHLNDTFHF
DSEKLQVGQGVSLTLKTTQPGVTGLLLAVEGPAATRTLTQPRKDSETVDEDEELDPALVA
SAGKRHALSIGDLVTGTVKSVKPTHVLVSLEDGIVGSLHASHVLDDVPAGTVPTARFKVG
KRVKVRVIGGRDVKTHRYLPISHPRFIRAVPELSVRPSDLEKDGCATLNTDSVSPLEKLQ
QYQAGQTVTCFLRKFNTVKKWLEVEITPDLRGRIPLLLTSLSLKVLKHPDKTFRIGQALK
ATVVGADSSRAFLCLSLIGPHRLEEGDVAMGRVVKVTPTEGLTVSFPFGRTGSVSIFHVS
DAYLETPLEGFTPQQIVRCYVLSTAGPELTLSLRSSRTNPETKSKVADPEINSTQDLQKG
QLLRGYVKAVQPQGVLLSLNHQKGQVGLSLLPRDTGKPDVCPAAPSVPLPGAQEREQSGG
DPEQRTPKRKKKQRPSKEEKEPPEPQARARARGKRGCPEPEEQQEAVIKKQKKAAPAEEE
DSGVDVYYREGDEEESSAPQEKPARPAEVPRLQLATGFLWDVGLDSLTPALPPRAESSDS
EEEAEPRPATQKSKKERALERRQAEKELARLEDALMDPGRQPESADDFDRLVLSSPNSSI
LWVQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSREALEKV
FERAVQYNEPLKVFFHLADIYTKSEKFQEAGDLYNRMLKRFRQEKNVWIKYGGFLLRRGQ
AGASHRTMQRALECLPAKEHVDVIVKFAQLEFQLGDTERAKAMFENTLSTYPKRTDVWSV
YIDMTIKHGSQKDVRPGG
NT seq
5277 nt
NT seq
+upstream
nt +downstream
nt
atggctgacttcgaagaaagtttccctcgagggggtacgagaaagacccccaaatcagaa
aaagcgcctcagcgatcagtggaacaagacaacttatttgatgtgtctcatgaagaggaa
tcatccaccaaaaggaaaaagagccaaaaggggccagcacaagcaaagaagctgaaaatt
gaaaagagagaaagcagcaagcctgtgaaagagaagttcgaactccttggcgttaaggtg
ctgtgtgaagggatgcgtattttgggttgtgtgaaggaggtaaagcagctggaactggtg
gtcagtctccccaatggcctccagggctttgtgcaagtcaccgaaatctgtgatgcttac
accaaaaagctgagcgagcagatggcacaggaggaaccgctgacggaagtggccagcttg
cccgaactcttctctccggggatgctggtccgatgtgtggtgagcagtctgggcaccaca
gagaaaggcaaacagacggtcaagctatcgctgaaccccaagaaagtcaacgacgtgctg
agtgcagacgccctgaagcctggcatgctactcacaggcactgtgtccagcctggaagac
catggctatctggtggacattggtgttgctggagcaagagcttttctgcccctgaagaaa
gtccaggagaagagcaaaggtgctaagctgcaggtgggtcagtacctgaactgcacgatc
gaagaggtgaagggcagtggaggagttgtccggctctctgtgggccacgccgagggctct
gcagccctggcgactgaggagcaaaactggacccttaacaacctgctgccgggactggtg
gtcagagcccaggtgcagaaggtgaccccacttggcctaacgctaaaattcctctcgtta
tttactggcctggttgacttcatgcatctggatcccaagaaagcggggacgtatttctcg
aatcagacggtgagggcctgtgtccttgctgtccatccccggaccagagaggtgcggctc
agcctgcgccccgtcttcctgcagtccgggcgcccgctctcccgcctgtcctgccagaac
ctgggggccgtgctggaggacgtgcccgttcaaggcttcttccacaaagcgggcgccacc
ttcaagctgaaggacggctctctggcctacgcccggctcggccagctctccgattccaag
aaggtctttaatcccgaagccttcaagccagggaacctgcacaagtgccgtgtcgtcgac
tacagcccgatggacgagctggcttttctctctttgcgcacgtctgtgattgaggcgcag
taccttacgtatagtgacatcagaccgggggaattggtaaagggcacggtgctgtccatg
aagccgttcgggatgctggtggagctgagcaagcaaattaggggcctggtcccttccttg
cacctggctgatgtcctgatgaagaatccggagaagaagtacaaggttggcaaggaggtc
aagtgccgggtcttgctgtgtgacccggatgccaagaagctgttgctcaccttgaagaaa
accctggtgcagtccaaactgccagccatcacctgctacgccgacgccaagccccggctg
cagacacacggcttcatcctcagggtcaagaactacggctgcatcgtcaagttctacaac
gacgtgcagggcctggtgcccaggcacgagctcagtgccgagtacatcccagaccccgag
agggtgttctaccccggccaggtggtgaaggtggccgtgctgaactgcgagcccgccaaa
gagaggatgctcctgtccctccggacgccgggtgaccccaacaaagagcccgagggaccc
agtcagaagaaaaatcaatccgtcagcacgggtcagctggtggacgtgaaggttctcgag
aaaacccccgacgggctggaggtggctgtcctgccccacaacatccggggttttctcccc
atgtcgcacctctcggaccacgtctccaacgggcccctgttgcatcactggctccaggaa
ggcgacacgcttcacaaagtcctgtgcctgagccagacggagggacacattctcctctgc
aggaagccggccttggtctccacagtagaaggcggccagaaccccaagagctttgcagaa
atccaccctggcatgctgctcatcggctttgtgaagtgcatcaaggactacggggtgttt
gtccagttcccctcgggcctcagtggactggcccccaaagctctcatgagtgacaagttc
gtgaccaccacaagcgaccactttgtggaggggcagacggtggtcgccaaggtgacccac
gtggacgaggagaagcagcggatgctgctgtcgctgcggctgtcggactgttctctgggg
gaccgggccgccaccagcctgctcctgctcacccagtgcctggaggagcagcagggcgtg
cgctgcctcatgggcaaccgagactccgtgctgatccagacgctggcccagatggccccg
gggatggtcctcgacctggaggtgcaggaggtgctggaagatggctccgtggtgttcagt
gagggcccggtggcgggcctggtgctgcgggccagtcgataccatcgggcaggacaggac
gtggagtccgggcagaagaagaaggccgtggtcctcagcgtggacctgctgaagttggag
gtgcatgtttccctgctgccggatctgctgaaccagaaggcgaagaagctgaagaaaggc
agcaggcaccaggccgtcgtgcagcacttggaggagtccttcgctgttgcctccttggcg
gggtccggccacctggcagctttctccctgacctctcacctcaacgacaccttccacttc
gactcggagaagctgcaggtgggacagggggtgtccctgaccctcaagaccacgcagccc
ggagtcacgggcctcctcctggccgtcgaggggccggctgccacgcggaccctgacccag
ccccggaaggactctgagacggtcgacgaagacgaggaactggacccggctctggtcgcg
agcgccgggaagcggcacgccctgtccatcggggatctggtcacggggaccgtgaagtcg
gtgaagcccacccacgtgttggtgagcctggaggacggcatcgtcggctctctgcacgcc
tcccacgtgctggatgacgtgccggcgggcaccgtgcccaccgccaggttcaaagtgggg
aagagagtcaaggtgcgagtgattggcgggcgagacgtgaagacgcacaggtacctccca
ataagccaccccagatttattcgagcggtcccagagctgagtgttcggccaagtgacctg
gagaaggacggctgcgccactctcaacactgactccgtcagccccctggagaagctccag
cagtaccaggcaggtcagaccgtgacctgcttcttgaggaagttcaacacggtcaagaaa
tggctcgaggtggagatcacgcccgacctccgggggagaatccccctgctgctcacctct
ctcagcttgaaggtcctgaaacacccagataagacgttccggatcggccaggccctgaag
gccactgtggttggcgccgactcctccagggccttcctgtgtctctcactcataggtcct
cacaggctggaggaaggggacgtggccatgggccgggtggtgaaggtgacgcccacggag
gggctgaccgtctccttccccttcgggaggacggggagtgtcagcatcttccatgtgagc
gacgcctacctggagacgcccctggagggcttcacgccccagcagattgtcaggtgttat
gtcctgtccacggcgggccctgagttgacactgtcgctgcgatcatccaggacaaaccca
gagaccaagagcaaagtggcagatcccgagatcaactccacccaggacctccagaagggg
cagctcctgaggggctacgtgaaggccgtgcagccccagggcgtgctcctgagcctgaat
caccagaagggccaggtgggcctgtccctgctgccccgtgacaccgggaagcccgacgtg
tgcccagccgccccgagcgtgccgctgcccggggcgcaggagagggagcagagcggaggg
gacccggagcagagaacccccaagaggaaaaagaagcagcggcccagcaaggaggagaag
gagcccccagaaccgcaggcgcgggcgcgggcgcggggcaagcgggggtgcccggagccc
gaggagcagcaggaagcagtgataaagaagcagaagaaagcggctccggccgaggaggag
gacagcggagtggacgtgtactaccgggagggggacgaggaggagagcagtgcgccccag
gagaagccggccaggcctgcagaggtgccccggctacagctggccactggcttcctgtgg
gatgtggggctggactcgctgaccccagccctgccgccccgagcagagagctccgacagc
gaggaggaggcagagccacggccggccacgcagaagagcaagaaggagcgggcgctggag
aggcggcaggcggagaaggagctggcgcgcctggaggacgcgctcatggaccccggccgg
cagcccgagagcgccgacgacttcgaccgcctggtgctcagctcccccaacagctccatc
ctgtgggtgcaatacatggccttccacctgcaggccacggagatcgagaaggcccgggcc
gtggccgagagggcgcttaagaccatctcgttcagggaggagcaggagaagctgaacgtg
tgggtggctctgctgaacctggagaacatgtacggctctcgggaggccctggagaaggtg
ttcgagcgggccgtgcagtacaacgagcctctcaaagtcttcttccacctggccgacatc
tacaccaagtcggagaagttccaggaagccggggacctgtacaaccggatgctgaagcga
ttccggcaggagaaaaacgtctggatcaaatatgggggctttctgctgcggaggggccag
gccggggccagccaccgcaccatgcagcgcgccctggagtgcctgcccgccaaggagcac
gtggatgtgattgtcaagttcgcccagctcgagttccagctgggggacaccgagcgggcc
aaggccatgttcgagaacacgctgagcacgtacccgaagcgcacagacgtctggtcggtc
tacatcgacatgaccatcaagcacggcagccagaaggacgtgcggccaggagggtga
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integrated database retrieval system
