Sorex araneus (European shrew): 101554954
Help
Entry
101554954 CDS
T07854
Symbol
HTT
Name
(RefSeq) huntingtin
KO
K04533
huntingtin
Organism
sara
Sorex araneus (European shrew)
Pathway
sara05016
Huntington disease
sara05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
sara00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
101554954 (HTT)
05022 Pathways of neurodegeneration - multiple diseases
101554954 (HTT)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sara03019
]
101554954 (HTT)
04131 Membrane trafficking [BR:
sara04131
]
101554954 (HTT)
03029 Mitochondrial biogenesis [BR:
sara03029
]
101554954 (HTT)
Messenger RNA biogenesis [BR:
sara03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
101554954 (HTT)
Membrane trafficking [BR:
sara04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
101554954 (HTT)
Mitochondrial biogenesis [BR:
sara03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
101554954 (HTT)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_2
HEAT_ECM29
HEAT_EF3_N
Motif
Other DBs
NCBI-GeneID:
101554954
NCBI-ProteinID:
XP_004617522
LinkDB
All DBs
Position
Unknown
AA seq
3061 aa
AA seq
DB search
MATLEKLMKAFEKKELLATKKDRVNHCLTICENIVAQSLRNSPEFQKLLGIAMELFLLCS
DDAESDVRMVADECLNKVIKALMDSNLPRLQLELYKEIKKNGASRSLRAALWRFAELAHL
VRPQKCRPYLVNLLPCLTHTSKRPEESVQETLAAAIPKIMASFGNFANDNEIKVLLKAFI
ANLRASSPTVRRTAAGAAVSICQHSRRTQYFYSWLLSVLLGLLVPVEDGHSTVLILGVLL
TLRYLVPLLQQQVKDTSLKGSFGVTRKEMEVSPSTEQLVQVYELTLHYTQHQDHNVVTGA
LELLQQLLRTPPPELLLALTTAGGGGQLAGAKDEPGGRSRSGSIVELIAGGGSSCSPVLP
RKQKGMVLLGEAAALEDDTEPRSEGSSPAFTASVKGEIGGELAASSGLSTPGSASSAADS
VAHDIITEQPRSQHTLQPDTVDLSSCDLTSAATDGDEEDILSPSSSQISAVPSDPATDLN
DGTQASSPISDSSQTTTEGPDSAVTPSDSSEIVLDGVDSQHSGIGQPEDEDISDEASDAF
RSSSLALQQAHLLERVGHSRQPSDGSVERLALREDAVEPSELENKPCRIKGDIGQSADDD
SAPLIHCVRLLSASFLLTGEKNVLVPDRDVRVSVKALALSCVGAAVALHPEAFFSKLYKV
PLDPMEYPEEQYVSDILNYINHGDPQVRGATALLCGTLICSVLSRSRFHVGHWMGNIRTL
TGNTFSLADCIPLLQKTLKDESSVTCKLACTAVRHCIMSLCSSSYSALGLQLLTDVLSLR
NSSYWLVRTELLETLAEIDFRLVSFLEAKADSLHRGAHHYTGLLKLQERVLTNVVIYLLG
DEDPRVRHVAATSLARLVPKLFYKCDQGQADPVVAVARDQSSVYLKLLMHETQPPCHFSV
STITRIYRGYNLLPSITDVTMENNLSRVIAAVSRGLITSTTRALTFGCCEALCLLSTAFP
VCIWSLGWHCGVPPLSTTDESRKSCTVGMAAMLLTLLSSAWFPLDLSAHQDALILTGNLL
AASAPKSLRSSCSSEEETTPAATKQEEVWPALADRSLVPMVEQLFSHLLKVINICAHVLD
DVTPGPALKAALPSLTNPPSLSPIRRKGKEKEPGEQASAPLSPKKGSEASPASRQSDTSG
PATANKSSSLGSFYHLPSYLKLHDVLKATHANYKVTLDLQNSSEKFGGFLRSALDVLAQI
LELATLQDIGKCVEEILGYLKSCFSREPTMATVCVQQLLKTLFGTNLASQFDGFSSNPSK
CQGRAQRLGSSSVRPGLYHYCFMAPYTHFTQALADASLRNMVQAEQDHDPAGWFDVLQKM
STQLKSNLTSVTKNRADKNAIHSHIRLFEPLVIKALKQYTTTTSVQLQRQVLDLLAQLVQ
LRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEAIIPNIFFFLVLLSYERYHSKQIIGI
PKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGTNKADAGKELETQKEVVVSMLLR
LIQYHQVVEMFILVLQQCHKENEDKWKRLSRQVADVVLPMLARQQMHIDSHEALGVVNTL
FEILAPASLRPVDMLLRSMFVTPDTMASVSTVQLWISGILAILRVLISQSTEEIVLSRIQ
ELALSPYFISCQIINRLRDGDRSPTPEEHSEGKQTKMLPEETFSRFLLQLVGILLEDIGT
KRLRVEMSEQQHTFYCQELGTLLMCLIHIFKSGMFRRITAAATRLFTAEAADGSFYGLES
LKAHVRSMAPTHPALVLLWCQVLLLVSHTDYRWWAEVQQTPKRRSLSSTKTLSPQLSGEE
EDADSAARLGMCNREIVRRGALILFCDYVCQNLHDSEHLTWLIVNHIQDLISLSHEPPVQ
DFISAVHRNSAASGLFIQAIQSRCDNLSAPATLKKTLQCLEGIHLSQSGAVLTLYVDKLL
STPLRVLARMVDTLACRRVEMLLAANLQSSAAQLPAEELRRIQEHLQSSGLAQRHQRLYS
LLDRLRLTSAPGSHGPTPPLTSHPLDGDGPLALEMINPDKDWYIRLVQSQCWTRSDSALL
EGAELVNHIPAGDLSAFMMDPEFNLSLLAPCLGLGLREISGGQKSPLFEAAQMVTLDRVA
SMVQQLPAVHQVFQPFLPAEPTAYWNKLDDLFGDAALYRSLTTLARALAQYLLATSKLPG
RLHLPPEKEGDTVKFVVMVLEALAWHLVHEHIPLSLDLQAGLDCCCLALQLPGLWSVFSS
PDMVTHACSLIHCIRCLLEAIVVQPGDQLLSPERTDIPQTARNEVGSNAQTPEYVSTACV
MVAEMVESLPSVLALGHHRSSGVPAFLTPVLRNIVVSLARLPLVNSYTRVPPLVWKLGWS
PRPGGDFGTVYPEIPVEFLQEKEVLKGFIYRINTLGWTSRTQFEETWATLLGVLVTQPLV
LEQEESPPEEDTERTQINVLAVQAISSLVLSAMTVPVAGNPAVSCLEQQPRSKPLKALDT
RFGRKLSVIRGIIEQEIQAMVSKRENIATHHLYQAWDPVPSLSAATTGVLISHDKLLLQT
NPERELGDMSYQLGQVSIHSMWLGNNITPLRAEEWGDDEEEEADTPAPASPPTSPVNSRK
HRAGVDIHSCSQFLLELYSRWILPSSSGRKTPVILISEVVRSLLVVSDLFTERSQFEMMY
VTLMELRRAHPTEDEILLQYLVPATCKAAAVLGMDKAVAEPVSRLLESALRSSHLPSKIG
ALHGVLYVLECDLLDDTAKQLIPVVSDYVLSNLKAVAPCVNVHSQQHVLVTCATAFYLIE
NYPLDVGPEFSASVIQMCGVMLSASEEATPSIVYHCVLRGLERLLLSEQLSRLDAESLVK
LSVDRINVHSPHRALAALGLMLTCMYTGKEKISPGRAPEPSPAAPDSESVIVAMERVSVL
FDRIRKGFPCEARVAARILPQFLDDFFPPQDVMNKVIGEFLSNQQPYPQFMATVVYKVFQ
TLHNTGQSSMVRDWVMLSLSNFTQRTPVAMAVWSLSCFFISASTSPWVSATLPHVVSRMG
KLEQVDINLFCLVATDFYRQQIEEELDRRAFQSVFEVVAAPGNPYQRLLTCLRNLHEGTA
C
NT seq
9186 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccctcgaaaagctgatgaaggccttcgaaaagaaagaactcttggccaccaag
aaagaccgcgtgaatcactgtctgacaatctgtgaaaacatagtagcgcagtctctcaga
aattctccagaatttcagaaacttctgggcatcgccatggagcttttcctgctgtgcagt
gatgacgctgagtctgatgtgaggatggtggctgatgagtgtctcaacaaggtcatcaag
gccctgatggactccaacctcccacggctgcagctcgaactctacaaggaaataaagaag
aacggtgcatctcggagcctgcgtgctgccctgtggaggtttgctgagctggcgcacctg
gtccggccccagaaatgcaggccgtacctggtcaacctcttgccttgcctgactcacaca
agcaagaggcccgaggaatctgttcaggaaactttggctgcagctatacccaagatcatg
gcttcctttggcaattttgcaaacgacaatgaaattaaggttttgttgaaagctttcatc
gcgaaccttcgcgccagctccccgactgtccgacgcaccgcagctggcgctgctgtgagc
atctgccagcactcccggaggacgcagtatttctacagctggctgctcagtgtgctgctg
ggcttacttgttcctgtcgaggacggacattccacagtcctcattcttggggtgctgctc
acactgaggtatttggtgcccctgctgcagcagcaggtcaaggacaccagcctgaaaggc
agctttggggtgacacggaaggaaatggaggtctcgccctcgacagagcagcttgtccag
gtgtacgagttgaccctgcactacactcagcaccaggaccacaacgttgtgaccggagcg
ctggagctcctgcagcagctcctgcgcacccccccaccggagctgctgctggccctgacc
acagctggtggcggggggcagctggcgggtgccaaagatgagccgggtggccggagtcgg
agtgggagtatcgtggagctgatcgctggaggggggtcttcctgcagccccgtgcttccc
agaaagcaaaaagggatggtgctgttgggagaagcagctgccttggaggatgacacggaa
ccgaggtcagagggcagcagcccagccttcacagcctcggtcaagggtgagatcggtggt
gagctggcggcctcttccggcctctctacgccgggctcggccagctcggctgcggactcc
gtggcgcacgacatcatcactgagcagcctcgatcgcagcacacgctgcagcccgacaca
gtggacctgagcagctgtgacctgaccagcgcggccactgatggggatgaggaggacatc
ctgagccccagctccagccagatcagtgccgtgccgtctgaccctgccacggacctgaac
gacggcacacaggcctcctcgcccatcagtgacagctcccagacgactactgaggggcct
gattcggccgtgaccccttcagacagttccgaaattgtcttagatggagtggacagccag
cattcggggattggccagcccgaggatgaggacatttccgacgaggcttcagatgccttc
agaagctcttccctcgccttgcagcaggcgcacttgctggagcgcgtgggccacagcaga
cagccgtctgacggcagcgtggagcgccttgcgctgagagaggatgctgtggagcccagc
gagctcgagaacaagccctgccggatcaaaggcgacataggacaatctgcggatgatgac
tctgctcctcttatccactgtgttcgccttttgtctgcatcatttttgctgacgggggag
aagaacgtcttggttcctgacagggacgtacgggtcagtgtgaaagcactggcgctcagc
tgcgtgggagcggctgtggccctgcacccggaagctttcttcagcaaactttacaaagtt
cctttggaccccatggaatatcctgaggagcagtacgtgtctgacatcctgaactacatc
aaccatggagacccgcaggtccgaggagccacagcccttctctgtgggaccctcatctgc
tctgtcctgagcaggtcccgcttccacgtgggacattggatgggcaacatccgaactctg
acaggaaacactttttctctggcggactgcattcctttgctgcagaaaacgctgaaggat
gaatcttctgtaacctgcaagttggcttgtacagctgtacggcactgcattatgagtctg
tgcagcagcagctacagtgcactgggactgcagctgctcaccgacgttctaagcctaagg
aacagctcctattggctggtgcggacggagctcctggagaccctggcggagatagacttc
cggttggtgagctttctggaggccaaagcagacagcttacaccgcggagcacatcattac
actgggcttttaaaactgcaggaacgagtgctcactaatgttgtcatctatttgctcggg
gatgaagaccccagggtccggcatgttgctgcgacttcgttagcgaggcttgtcccaaag
ctgttttataaatgtgaccaaggacaagctgaccctgtggtggccgtggcccgggaccag
agcagcgtttacctgaagctgctcatgcatgagacgcagccgccctgccacttctccgtc
agcaccatcaccagaatatatagaggctataatttactgcccagcatcaccgatgtcacc
atggaaaacaatctttcgagagtgattgccgctgtttctcgtggactgatcacctccacc
actcgcgcgctcacatttggatgctgtgaagctttgtgtctcctttcgacggcctttcct
gtttgtatttggagcttgggctggcactgtggagtgcccccgctgagcaccactgatgag
tcccgcaagagctgcacagtggggatggccgccatgctgctcaccttgctttcgtccgcc
tggttcccactcgacctctctgcccaccaggacgccctcattttgacaggcaacttgctc
gcagccagtgcccccaagtctctgaggagttcttgcagctctgaagaagagaccaccccc
gcagccaccaagcaggaggaggtgtggcccgcgctggcggatcggagcctggtgccaatg
gtggagcagctcttctcacacctgctgaaggtcatcaacatctgtgcgcacgtcctggac
gacgtgactcctgggcccgctctcaaggcagccttgccatccctgacaaacccgccctcg
ctgagtccaatccggcggaaggggaaggagaaagagcctggggagcaggcctcggcgccg
ctgagccctaagaaaggcagtgaggccagtccagcctctcgacagtctgatacctcaggg
ccagcgacagccaacaaatcctcctctctggggagtttctaccatcttccttcctacctc
aaactgcacgatgtcctcaaggccactcacgccaattacaaggtcaccttggatctgcag
aacagctctgagaagtttgggggctttctgcgctctgccctggatgttctcgctcagatc
cttgagttggcaactctgcaagacattgggaagtgtgtcgaagagatcctggggtatctg
aagtcctgcttcagtcgagagcccaccatggcgactgtctgtgtccagcaactgctaaag
actctttttgggacgaacttggcctcgcagtttgacggcttttcctccaaccccagcaag
tgtcaaggccgtgcgcagcgtctgggctcctccagcgtgaggcctggcttataccactac
tgcttcatggctccctacacccacttcacccaggccttggccgacgcaagcctgaggaac
atggtgcaggctgagcaggaccacgaccccgcaggctggtttgacgtactccagaaaatg
tctacccagttaaagagtaacctcacgagcgtcacgaagaaccgtgcagacaagaatgct
attcacagccacatacgcctgttcgagccgcttgtcatcaaagctctgaagcagtacacc
accaccacatccgtgcagctgcagaggcaggtcttggatctgttggcacaactggttcag
ttgcgggtcaattactgtcttctggactctgatcaggtgtttatcggatttgtgctgaag
cagtttgaatacatcgaagtgggccagttcagggaatcagaggcaattattccgaacata
tttttcttcctggtgttactgtcttacgaacgctatcattccaagcagatcattggaatt
cccaaaatcattcagctctgtgatggcatcatggccagtgggaggaaggccgtgactcac
gccatcccggccctgcagcccatcgtccacgacctctttgtgttgagaggaaccaataag
gccgatgcggggaaagagctggaaacgcagaaggaggtggtggtgtccatgctgctgaga
cttatccagtaccaccaggtggtagagatgttcatccttgtcctgcagcagtgccacaaa
gagaatgaagacaagtggaaacgcctgtctcggcaggtcgccgacgtcgtcctccctatg
ctggccaggcagcagatgcacatcgactcccacgaagccctgggtgtggtgaacacgctc
ttcgagatcctggcccccgcctccctccggcctgtggacatgcttctgcgtagcatgttc
gtcacccctgacaccatggcctccgtgagcacggtccagctatggatctccggcatcctg
gccattctgagggttctcatctcccagtcaacggaagaaatagttctttctcgaatccag
gagcttgccctgtctccctacttcatctcctgccaaataatcaataggttacgggacggc
gacagaagcccgacaccagaagagcacagtgaagggaaacagaccaagatgctgccggaa
gaaacgttttctcggttcctgctgcagttggtcggcatcctcctggaggacatcggcacg
aagcggctgagagtggagatgagcgagcagcagcacacgttctactgccaggagctgggc
acactgctcatgtgtcttatccacatcttcaagtcaggaatgttccggaggatcacagca
gctgccacacgcctcttcacggccgaggctgctgacggcagcttctatgggctggagagt
ctgaaggcgcatgtgcgctccatggcgcccacacacccagcgctcgtgctgctgtggtgc
caggtgctgctgctcgtcagccacacggactaccgctggtgggcggaggtgcagcagacc
cccaaaagacgcagtctgtccagcacgaaaacgctcagtccgcagctgtctggagaggag
gaggatgctgactctgcagccaggctgggcatgtgcaaccgggagattgtgcggagaggc
gcgctcatcctcttctgcgattacgtctgtcagaacctgcatgactctgagcacttgacc
tggctcattgtgaaccacatccaggacctgatcagcttgtcccacgagccgcctgtgcag
gacttcatcagcgccgtccaccgcaactctgccgccagtggcctcttcatccaggccatc
cagtctcgctgtgacaacctgtcggcccccgccaccctgaagaagacactgcagtgcctg
gaggggatccacctcagccagtcgggcgccgtgctcacgctctatgtggacaagctgctg
agcacaccgctccgcgtgctggcgcgcatggtcgacaccttggcttgtcgccgggtcgaa
atgctcctggctgccaatttacagagcagcgcagcccagctgccggcggaggagctgcgc
cgcatccaggagcaccttcagagcagcgggctggctcagagacaccagcggctctactcc
ctgctagacaggcttcgcctcacctccgcccccggctcccatggccccacgcctccgctc
acgtcccacccgctggacggggatgggcccctggcactggaaatgataaatccagacaag
gactggtacatccgtctggttcaatcccaatgctggaccaggtccgattctgccctgctg
gaaggggcggagctggtgaatcacatccccgctggggacctgagtgcattcatgatggac
ccggagttcaacctcagcctgctcgccccctgcctaggcctgggcctgcgtgaaatttct
gggggccagaagagccccctgtttgaagcagctcaaatggtgactctggaccgcgtggcc
agcatggtccagcagcttcctgctgtccaccaagttttccagccattcctgcctgcggag
cccactgcttactggaacaaattagacgacctgtttggggatgctgcactctaccgctct
ctgaccactctggcacgtgcactggctcagtacctgctggccacttccaagctgcctggc
cgtttgcaccttcccccagagaaggagggtgataccgtgaagtttgtggtgatggtgctg
gaggcactggcctggcacttggtgcacgagcacatcccgctgagcctggacttgcaggct
ggcctggactgctgctgcctggccctgcagctgcctggcctgtggagcgtgttctcctcc
ccggacatggtcacccacgcctgttccctcatccactgcatccgctgcctcctggaagcc
attgtggttcagcctggagatcagctgctgagtcccgagaggaccgacattccacagact
gccagaaacgaagttggttcaaatgcacagacccctgagtacgtgtccacggcctgtgtg
atggttgcggaaatggtggagtccctgccgtcggtgctagccctgggccatcacaggagc
agcggcgtgccggccttcctcacacccgtgcttaggaacatcgtggtcagcctggcgcgc
ctgcccctcgtcaacagctacacacgtgtccccccgctggtgtggaagctcggctggtca
ccgagaccaggcggggacttcggcacagtataccctgagatccccgtggaattcctgcag
gaaaaggaagtcctcaagggcttcatctaccgcatcaacacgctagggtggaccagccgg
acgcagttcgaggagacgtgggccacccttcttggggtgctggtgacacagccactcgtg
ctggagcaggaagaaagcccgccggaagaggacacggagaggacccagatcaatgtcctg
gctgtgcaggccatcagctccctggtgctgagcgccatgactgtccccgtggccggcaac
cctgctgtgagctgcttggagcagcagcctcggagcaagcccctcaaagccctcgatacc
aggtttgggagaaagctgagcgtcatccgaggaatcatagagcaagaaattcaggcaatg
gtttcaaagagagagaacatcgccacccatcacctgtaccaggcgtgggaccctgttcct
tctctgtctgcagccactacaggtgtcctcatcagccacgacaagctgctgctgcaaacc
aaccctgagcgggagctgggcgacatgagctaccagctgggccaggtgtccatccactcc
atgtggctggggaacaacatcacgcccctgcgagcggaggagtggggcgacgacgaggag
gaggaggcagacacacctgcaccagcctcgccaccgacgtccccagtgaattccaggaag
caccgcgccggggtggatatccactcctgttcacagttcctgctggagttgtacagtcgc
tggatcctgccctccagttcaggcagaaagacgcctgtcatcctcatcagcgaagtggtg
cgatctctcctcgtggtgtcggacttgttcaccgaacgcagccagtttgagatgatgtac
gtgaccctgatggaactgcggagggcgcatcccaccgaggacgagatcctgctccagtat
ctggtgcccgccacctgcaaggcggctgctgtccttggcatggacaaggccgtggccgag
ccagtgagccggctgctggagagcgccctgcggagcagccacctgcccagcaagatcggg
gccctgcacggcgtcctctatgtgctggagtgtgacctgctggatgacactgccaaacag
ctcatcccggtcgtcagcgactacgtcctctccaacctcaaggccgtggccccctgcgtg
aacgtccacagccagcagcacgtgctggtgacctgcgccaccgccttctacctgatcgag
aactaccctctggatgtggggcccgagttctcggcgtccgtcatacagatgtgtggggtt
atgctgtcggccagcgaggaggccaccccgtccatcgtttaccactgcgtgctgcgaggc
ctggagcgcctcctgctgtctgagcagctctcgaggctggacgccgagtccctggtaaag
ctgagcgtggacagaatcaacgtgcacagcccacaccgcgccctggcggccctgggcctg
atgctcacctgcatgtacacaggaaaggagaagataagccccggcagggctcctgagccc
agccccgctgccccggacagtgagtcggtgatcgtggccatggagcgtgtgtccgtgctc
ttcgacaggatccggaagggctttccctgtgaggcccgcgtggcggcgcggatcctgccc
cagtttctcgacgacttcttcccaccccaggacgtgatgaacaaagtcatcggggagttt
ctgtccaaccagcagccatacccgcagttcatggccaccgtcgtgtacaaggtcttccag
acgctgcacaacacgggccagtcatccatggtgcgggactgggtcatgctgtcgctgtcc
aacttcacgcagaggaccccagtggccatggctgtgtggagtctctcctgcttcttcatc
agcgcgtccaccagcccgtgggtgtcagccaccctcccgcatgtggtcagcaggatgggc
aagctggagcaagtggacattaacctcttctgcctggtggccacggacttctacaggcag
cagatagaggaggagctggaccgccgggcctttcagtcagtgttcgaggtggtggcggcg
cccgggaacccataccagcgcctgctcacgtgcttgcggaacctgcacgagggcaccgcg
tgctga
DBGET
integrated database retrieval system
