Sorex araneus (European shrew): 101555936
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Entry
101555936 CDS
T07854
Symbol
CNOT6L
Name
(RefSeq) CCR4-NOT transcription complex subunit 6-like isoform X2
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
sara
Sorex araneus (European shrew)
Pathway
sara03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sara00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101555936 (CNOT6L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sara03019
]
101555936 (CNOT6L)
Enzymes [BR:
sara01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
101555936 (CNOT6L)
Messenger RNA biogenesis [BR:
sara03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101555936 (CNOT6L)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
101555936 (CNOT6L)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_4
LRR_14
LRR_1
LRR_LRWD1
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-GeneID:
101555936
NCBI-ProteinID:
XP_004617916
LinkDB
All DBs
Position
Unknown
AA seq
550 aa
AA seq
DB search
MPKEKYDPPDPRRIYTIMSAEEVANGKKSHWAELEISGRVRSLSTSLWSLTHLTALHLND
NYLSRIPPDIAKLHNLVYLDLSSNKLRSLPAELGNMVSLRELLLNNNLLRVLPYELGRLF
QLQTLGLKGNPLSQDILNLYQDPDGTRKLLNFMLDNLAVHPEQLPPRPWITLKERDQILP
SASFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQEVETEQ
YFTLFLPALKERGYDGFFSPKSRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQV
AMANSDGSEAMLNRVMTKDNIGVAVVLEVHKELFGAGMKPIHAADKQLLIVANAHMHWDP
EYSDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNSLPDSGVVEYLSN
GGVADNHKDFKELRYNECLMNFSCNGKNGSSEGRITHGFQLKSAYENNLMPYTNYTFDFK
GVIDYIFYSKTHMNVLGVLGPLDPQWLVENNITGCPHPHIPSDHFSLLTQLELHPPLLPL
VNGVHLPNRR
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaggaaaaatatgatcctccagatcctcgcagaatttataccatcatgtcagca
gaggaggtagccaatgggaaaaaatctcactgggcagaattagaaatctcgggtagagtg
cggagcctaagtacatcactttggtcattgacacacttgacagcactgcacctaaatgac
aattaccttagtcgcattccacctgatattgccaagcttcataatctggtttacctggat
ctatcatccaataaactcagaagtttaccagcagaactaggaaacatggtgtctctcagg
gaattgcttttaaataacaatctgttacgggttttgccttatgaacttggtcggctcttc
cagctacaaactctaggtttgaaaggcaatcctttatcacaggatattctcaatttatac
caggacccagatggaacccgaaagctactgaacttcatgcttgacaatcttgcagttcat
ccagagcagcttcctccgaggccatggattacattaaaagaacgagaccaaattctgcca
tcagcatcattcacggttatgtgttacaatgtgttatgtgataaatacgccacccggcag
ctatatggctattgcccatcctgggcattaaactgggaatacaggaaaaagggaattatg
gaagaaattgttaactgtgacgcagatatcattagtcttcaggaagtggaaacagagcaa
tacttcactctctttctgccagcattgaaggagcgtggatatgatggatttttttctcca
aagtcacgtgccaaaatcatgtctgagcaggagagaaagcatgtggatggttgtgcaata
ttcttcaaaacagaaaaatttacattagtgcagaaacatacagtggaatttaaccaagtg
gcaatggctaattcagatggatccgaagctatgctaaacagagtaatgacaaaagataat
attggtgttgctgtggtattagaggtccacaaagaactatttggagcaggtatgaagcct
attcatgctgcagacaaacagctgctgatagtggctaatgcccacatgcattgggaccca
gagtattctgatgtgaagctcatccagaccatgatgtttgtgtcagaggttaaaaacatt
ctggagaaagcctctagtaggcctggcagcccaactgcagatcctaattccatcccgctg
gtgctatgtgcagatcttaactcattgccagattcaggtgttgtggaatatttaagcaat
ggaggagtagctgacaaccataaagacttcaaggaactaaggtacaatgagtgtcttatg
aatttcagctgcaatggaaagaatggaagctcagaagggagaatcacgcatggcttccaa
ctgaagagcgcctatgaaaataacttgatgccttataccaattacacctttgatttcaaa
ggcgtgattgactacattttctattccaagactcatatgaacgtgcttggtgtcctgggg
cctttagatcctcaatggctggttgagaacaacatcactgggtgtccacaccctcacatc
ccttcagaccacttctcactgttaacacaacttgaactccaccctccactcctgcctctt
gtcaatggtgttcacttgcctaatcggaggtag
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