Sorex araneus (European shrew): 101556591
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Entry
101556591 CDS
T07854
Name
(RefSeq) ATP-dependent RNA helicase DDX42-like isoform X2
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
sara
Sorex araneus (European shrew)
Pathway
sara03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sara00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101556591
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sara03041
]
101556591
Enzymes [BR:
sara01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101556591
Spliceosome [BR:
sara03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
101556591
Complex B
101556591
Complex C
U2 SnRNP specific factors
101556591
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
101556591
NCBI-ProteinID:
XP_004621812
LinkDB
All DBs
Position
Unknown
AA seq
942 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAISAGKKEEPKLPQQSHSAFGSTSSASGFGKSAPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVDLPYIPAENSPTRQQFHSKPADSDSDDDPLEAFM
AEVEDQAARDMKRLEDKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLNGDMDQSERNKV
ISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGLAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENTDRGSNNNVMSNYEAYKPSSGAMGDRLTAMKAAFQSQYKSHFVAASLSNQ
KAGSSAAGASGWTSAGSLNSVPTNSTQQGHNSPDSPVASATKGIPSFGNSGNLSSAPVTY
PSPGAQGINNTASGTTSREGIGGGNGKRERYTENRGGNRHGHGESGNRHGDSPRHGDGGR
HGDGYRYPESSRHTDSHRHGENRHGGGGGGGGGGSGGRHGESRNTNDGRNGESRKEGCNR
ESKMDPKVDSSKMDKTDSKPDKTADVFAVPEPPKRKKSRWDS
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaataaaggtggccctggcactaagaggggatttggctttggaggttttgcc
attagtgctggaaagaaggaggaaccaaaacttccacaacagtcccatagtgcctttggg
tcaaccagctcagcgtctgggtttggaaagtcagctccaccacagctcccttctttctat
aaaattggatctaaacgggccaacttcgatgaagaaaatgcgtattttgaagatgaggag
gaagactccagcaatgttgacttaccttacattcctgctgaaaactcgcctacccgccag
caattccattccaagcctgcagattctgacagcgatgatgatcccttggaggcattcatg
gctgaagtggaggatcaggcggctagagatatgaagagacttgaagacaaggacaaggaa
agaaaaaacgtaaagggtattcgagatgacattgaagaggaagatgaccaagaagcttat
tttcggtacatggcagaaaatccaactgctggtgtggttcaagaggaggaggaagataat
ttggaatatgatagtgatggaaatccaattgcaccttccaaaaaaatcattgatcctctt
cctcccattgatcattcagagattgattatccaccatttgaaaaaaatttttacaatgaa
catgaagagataaccaacctcacaccacagcaacttatagatctccggcataagctcaat
cttcgggtctctggtgctgcacctcctcgaccaggaagtagttttgctcattttgggttt
gatgaacaacttatgcaccagattcggaagtctgaatatacacagcccactccaatacag
tgccagggtgtgcctgttgccttaagtggtagagatatgattggcattgccaaaacaggc
agtggaaaaactgcagcctttatctggcctatgttgattcacataatggaccagaaggaa
ctggagccaggtgatgggccaattgcagtgattgtgtgtcctactagggagttgtgccaa
cagatccatgcagaatgtaaacggtttgggaaagcatataatcttcgatcggtggccgtg
tatggaggcgggagcatgtgggagcaggccaaggcccttcaggaaggggcagagattgtt
gtgtgtaccccaggtcgattgattgatcatgtgaagaagaaagccaccaatcttcagaga
gtgtcttaccttgtgtttgatgaagcagatagaatgtttgacatgggatttgaatatcag
gtgcggtccattgcaagtcatgtccgtcctgacagacagactctcttattcagcgcaact
tttcggaaaaaaattgaaaaattggcccgagacatcctgatcgatcctattcgagtcgtg
cagggagatattggagaggcaaatgaagatgtgacacagattgtggaaattctccattct
gggcccagcaaatggaactggctgacacgacgtctggtggagtttacctcttcaggaagt
gtccttctgtttgtgactaagaaagccaatgctgaagagctagccaataatcttaagcag
gaaggtcataaccttgggctgctcaatggggacatggatcagagtgaaagaaacaaggtc
atttcagacttcaagaaaaaggacattccagtcctggttgccacagacgttgcagcccgt
ggtctggacatcccttctattaagactgtcattaactatgatgtggctcgagatattgac
actcacactcacagaattggccgtacgggacgagcaggggagaaaggacttgcctatact
ttgctgacccctaaggatagcaattttgctggtgaccttgtccggaacttggaaggggcc
aatcagcatgtttctaaggaacttctcgatctggcgatgcagaatgcctggtttcggaaa
tcccgcttcaaaggagggaaaggcaaaaagcttaacattggtggaggtggcctaggctac
agggagaggcctggcctaggctctgagaacacggaccgaggcagtaacaacaacgtcatg
agcaactatgaggcttacaagccctcctcaggagccatgggagatcgactgacagcgatg
aaagcagctttccagtcacagtacaagagtcacttcgttgctgccagcttaagcaaccag
aaggctggaagctcagctgctggggcaagtggatggactagtgcagggagcttgaattct
gttccaactaattctacccagcaaggccataatagtcctgacagccctgttgccagtgcc
accaagggcatcccaagttttggcaattccgggaacctcagcagtgctccagtgacctac
ccttctcctggagcccagggcatcaacaacacagcttcggggactaccagccgagaaggg
atcgggggtggcaatgggaaacgagagcgatacactgagaaccggggtggcaatcgtcat
ggtcatggagagagtggcaatcggcatggtgacagtccacgtcatggagatggtggtcgc
catggagatggataccggtacccagaaagcagccgtcacactgatagccatcgacatggg
gagaacaggcacggaggaggaggaggaggaggaggaggaggcagcggaggccgacatggg
gaaagcagaaatacaaatgatggtcggaatggtgaaagcaggaaagaaggctgtaatcgt
gagagcaagatggaccccaaggtggacagcagcaagatggacaagacggacagcaagcca
gataagacagctgatgtctttgctgtccctgagccccccaaacgcaagaaaagccgatgg
gacagttag
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