Sorex araneus (European shrew): 101556778
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Entry
101556778 CDS
T07854
Symbol
ARID1A
Name
(RefSeq) AT-rich interactive domain-containing protein 1A isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
sara
Sorex araneus (European shrew)
Pathway
sara03082
ATP-dependent chromatin remodeling
sara04714
Thermogenesis
sara05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
sara00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
101556778 (ARID1A)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
101556778 (ARID1A)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
101556778 (ARID1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sara03000
]
101556778 (ARID1A)
03021 Transcription machinery [BR:
sara03021
]
101556778 (ARID1A)
03036 Chromosome and associated proteins [BR:
sara03036
]
101556778 (ARID1A)
Transcription factors [BR:
sara03000
]
Eukaryotic type
Helix-turn-helix
ARID
101556778 (ARID1A)
Transcription machinery [BR:
sara03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
101556778 (ARID1A)
Chromosome and associated proteins [BR:
sara03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
101556778 (ARID1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
101556778
NCBI-ProteinID:
XP_004603533
LinkDB
All DBs
Position
Unknown
AA seq
1903 aa
AA seq
DB search
MDQMGKMRPQPYGGTNPYSQQQGPPSGPQQGHGYPGQPYGSQTPQRYPMTMQGRTQSTMG
GLSYAQQIPPYGQQGPSGYGQQGQTPYYNQQSPHPQQQQQPPYSQQPQSQTPHAQSSYQQ
PPQSQPPQLQSSQAPYSQQPSQPPHQQSPTPYPSQQSTTQQHSQSQPPYSQPQAQSPYQQ
QQPQQPASSTLSQQAAYPQSQSQQSQQTAYSQQRFPPPQELSQDSFGSQASSAPSMTSSK
GGQEDMNLSLQSRPSSLPDLSGSIDDLPMGTEGALSPGVSTSGISSSQGEQSNPAQSPFS
PHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPAAVPGNQMPPRPPSGQSDSIMHPSMN
QSSIAQDRGYIQRNPQMPQYSSPQPGSALSPRQPSGGQMHTGMGSYQQNSMGSYGPQGSQ
YGPQGGYPRQPNYNALPNANYPSAGMAGSMNPMGAGGQMHGQPGIPPYGTLPPGRMSHAS
MGNRPYGPNMANMPPQVGSGMCPPPGGMNRKTQETAVAMHVAANSIQNRPPGYPNMNQGG
IMGTGPPYGQGINSMAGMINPQGPPYPMGGTMANNSAGMAASPEMMGLGDVKLTPATKMN
NKADGTPKTESKSKKSSSSTTTNEKITKLYELGGEPERKMWVDRYLAFTEEKAMGMTNLP
AVGRKPLDLYRLYVSVKEIGGLTQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQCLYA
FECKIERGEDPPPDIFAAADSKKSQPKIQPPSPAGSGSMQGPQTPQSTSSSMAEGGDLKP
PTPASTPHSQIPPLPGMSRSNSVGIQDAFPDGSDPTFQKRNSMTPNPGYQPSMNTSDMMG
RMSYEPNKDPYGSMRKAPGSDPFMSSGQGPNGGMGDPYSRAAGPGLGNVAMGPRQHYPYG
GPYDRVRTEPGIGPEGNMGTGAPQPNLMPSNPDSGMYSPSRYPPQQQQQQRHDSYGNQFS
TQGTPSSSPFPSQQTTMYQQQQQQNYKRPMDGTYGPPTKRHEGEMYSVPYSTGQGQAQQQ
QLPPAQPQPSSQQQAAQPSPQQDVYNQYGNAYPATAAAAAERRPAGGPQNQFPFQFGRDR
VSAPPGTNAQQNMPPQMMGGPIQASAEVAQQGTMWQGRNDMTYNYANRQSTGSAPQGPAY
HGVNRTDEMLHTDQRANHEGPWPSHGTRQPPYGPSAPVPPMTRPPPSNYQPPPSMQNHIP
QVSSPAPLPRPMENRTSPSKSPFLHSGMKMQKAGPPVPASHIAPAPVQPPMIRRDITFPP
GSVEATQPVLKQRRRLTMKDIGTPEAWRVMMSLKSGLLAESTWALDTINILLYDDNSIMT
FNLSQLPGLLELLVEYFRRCLIEIFGILKEYEVGDPGQRTLLDPGRFSKASSPAPVEGEE
EEEEDLLGPKLEEEEEEEVVENDEEMAFSGKDKEASENSEEKLISKFDKLPVKIVQKNDP
FVVDCSDKLGRVQEFDSGLLHWRIGGGDTTEHIQTHFESKTELLPTRPQGPCPPIPRKHV
TAMENMPGTTEQEGPPPDGLPEKRITATMDDMLSSRSSTLTEEGAKNAETTKESSKFPFS
ISPAQSHRNIKILEDEPHSKDETPLCTLLDWQDSLAKRCVCVSNTIRSLSFVPGNDFEMS
KHPGLLLILGKLILLHHKHPERKQAPLTYEKEEEQDQGVSCNKVEWWWDCLEMLRENTLV
TLANISGQLDLSPYPESICLPVLDGLLHWAVCPSAEAQDPFSTLGPNAVLSPQRLVLETL
SKLSIQDNNVDLILATPPFSRLEKLYSTMVRFLSDRKNPVCREMAVVLLANLAQGDSLAA
RAIAVQKGSIGNLLGFLEDSLAATQFQQSQASLLHMQNPPFEPTSVDMMRRAARALLALA
KVDENHSEFTLYESRLLDISVSPLMNSLVSQVICDVLFLIGQS
NT seq
5712 nt
NT seq
+upstream
nt +downstream
nt
atggatcagatgggcaagatgagacctcagccatatggcgggactaacccatactcgcaa
caacagggacctccatcaggaccacagcaaggacatgggtacccagggcagccatatggg
tcccagaccccgcagcggtacccgatgaccatgcagggccggacacagagtaccatgggc
ggtctctcttatgcacagcagattcctccctatggacaacaaggccccagtgggtatggt
cagcagggccagactccatattacaaccagcagagtcctcatccccagcagcagcagcaa
ccaccctattctcagcagccacaatcccagacccctcatgctcaatcatcgtatcagcag
ccaccgcagtcgcagccaccacagctccagtcctcccaggctccatattcccagcagcca
tcccagcctccacatcagcagtcccctactccatacccctctcagcagtctacaacccag
cagcactcccagagccagcccccctactcacaaccacaggcacagtctccctaccagcag
cagcaacctcagcagccagcatcctcgacactttcccagcaggctgcataccctcagtcc
cagtctcagcagtcacagcaaactgcctattctcagcagcgcttccctccaccacaggaa
ttatctcaagattcatttgggtctcaggcatcctcagccccctcaatgacctccagtaag
ggaggacaagaagatatgaacctgagtcttcagtcaagaccctcgagcttgcctgatctg
tctggttcgatagacgatctccccatggggacagaaggagctctgagccctggagtgagc
acatcagggatttccagcagccaaggagagcagagtaacccggctcagtctcctttctct
cctcacacttcccctcacctacctggcattcgaggcccctccccatcccctgttggctct
cctgccagtgttgctcagtctcgctcaggaccactctcgcctgctgcagtgccaggcaac
cagatgccacctcggccacccagtggccagtcagacagcatcatgcatccttccatgaat
caatcaagcattgcccaagatcgaggttacatccagaggaacccccaaatgccccagtac
agttccccccagcctggctcagccttatctccacgtcagccttccggaggacagatgcac
acaggcatgggctcctaccagcagaactccatgggaagttatggaccccaagggagtcag
tatggcccacagggaggctaccccaggcagccaaactataatgccttgcccaatgctaac
taccccagtgcaggcatggctggaagcatgaaccctatgggtgctggaggtcaaatgcat
gggcaacctggcatcccaccttatggcacactccctcctgggagaatgagtcatgcctcc
atgggcaaccggccttatggccctaatatggccaatatgccacctcaggttgggtcaggg
atgtgccccccaccagggggcatgaaccggaaaactcaagaaactgctgtcgccatgcat
gttgctgccaattctatccaaaacagaccaccaggctatcccaatatgaatcaagggggg
ataatgggaactggacctccctatggacaagggattaatagtatggccggcatgatcaac
cctcagggacccccatatcccatgggtggaaccatggccaacaattcagcaggaatggca
gccagcccagagatgatgggtcttggagatgtcaagttaactccagccaccaagatgaac
aacaaagcagatgggacacctaaaacggaatctaaatccaagaaatccagttcttctact
acaaccaacgagaaaatcaccaagttgtatgagctgggcggtgagcctgagaggaagatg
tgggtggaccgttatctggccttcacggaggagaaggcgatgggcatgacaaatctgcct
gctgtgggcaggaaacctctggacctctatcgcctgtatgtgtctgtgaaagagattggt
ggattgactcaggtcaacaagaacaaaaaatggcgggaacttgcaactaacctcaatgtt
ggcacctcaagtagtgccgccagctccttgaaaaaacagtatatccagtgtctctatgcc
tttgaatgcaaaattgaacggggagaagacccacccccagatatctttgcagctgctgat
tccaagaagtcccagcccaagattcagcctccctctcctgcgggatcagggtctatgcag
gggccacaaacacctcaatcaaccagcagttccatggcagaaggaggagacctgaagcca
ccaaccccagcatccacaccacacagtcagataccccccttgccaggcatgagcaggagc
aattcagttgggatccaggatgcctttcctgatggaagtgaccccacattccagaagcgg
aattccatgactccaaaccctgggtaccagcccagtatgaatacctctgacatgatgggg
cgcatgtcctacgagccaaataaggatccttatggcagcatgaggaaagctccagggagt
gatcccttcatgtcctcagggcagggccccaatggtgggatgggggacccctacagccga
gctgctggccctgggcttggaaatgtggcaatgggaccgcggcagcactacccctatgga
ggtccttatgacagagtgaggacggaacctggaataggacctgagggaaacatgggcact
ggagccccacaacctaatctcatgccttccaatccagactcggggatgtattctcccagc
cgctaccctccacagcagcagcagcagcagcgacacgattcctatggcaatcagttctcc
actcaaggcaccccttctagcagccccttcccgagccagcagaccacaatgtatcagcag
cagcagcagcagaattacaagcggccaatggatggcacttacggtcctcctaccaagcgg
catgaaggagagatgtacagtgtgccatacagcacagggcaggggcaagcccagcagcag
cagttgccccctgcccagccccagccctccagccagcagcaagctgcccagccttcccct
cagcaagatgtgtacaaccagtatggcaatgcctaccctgccactgccgcggcggctgct
gagcgccgaccagcaggcggcccccaaaaccagtttccattccagtttggccgagaccgt
gtctctgcaccccctggcaccaatgcccagcagaacatgccaccacaaatgatgggtgga
cccatacaggcatcagctgaggttgctcagcaaggcactatgtggcagggacgtaatgac
atgacctacaattatgccaacaggcagagcacgggttctgccccccagggccctgcctat
catggtgtgaaccgaacagatgaaatgctgcacacggatcagagggccaaccatgaaggc
ccttggccttcccatggcacacgccagcctccatatggcccctctgctcccgtgccaccc
atgacaaggccccctccatccaactaccagcccccaccaagcatgcagaatcacattcct
caggtatccagccccgctccccttccccggccaatggagaaccgcacatctccgagcaag
tctccattcctgcactctgggatgaagatgcagaaggcaggtcctccagtacctgcctca
cacatagcacctgcccccgtgcagccccccatgattcggcgggacatcaccttcccacct
ggctctgtagaagccacacaacctgtgttgaagcagaggaggaggctcacgatgaaagac
attggaaccccggaggcatggcgggtaatgatgtctctcaagtctggattgctggcagag
agcacgtgggcattagacaccataaacatcctgctatatgatgacaacagcatcatgacc
ttcaacctcagtcagctcccggggttactagaactccttgtggaatatttccgacgttgc
ctgattgagatctttggcattttaaaggagtatgaggtgggtgacccagggcagagaaca
ctactggaccctgggagattcagcaaggcatctagtccagctcctgtagagggggaggag
gaagaagaagaagaccttctaggtcctaagctagaagaggaagaagaggaggaagtagtt
gaaaatgatgaggagatggccttttctggcaaggacaaggaagcctcggagaatagtgaa
gagaaactgattagtaaatttgacaagcttccagttaagatcgtacagaagaacgacccg
tttgtggtagactgctcagataagcttgggcgtgtacaggagtttgacagtggcctgctg
cactggcggattggtgggggagacaccactgagcatatccagacccactttgagagcaag
acagagctgctgcctacccggcctcaggggccctgcccaccaatcccccggaaacatgtc
acagccatggagaatatgccagggacaacagagcaagagggacccccaccagatggcctt
ccagaaaaacggatcacagccactatggatgatatgttgtccagtcggtctagcacattg
accgaggagggagctaagaatgcagagaccaccaaggagagcagcaagtttccattcagc
atcagcccggcacagagccatcggaacatcaagatcctagaggatgaaccccacagtaaa
gatgagaccccactgtgcacccttctggactggcaggattcccttgccaagcgctgtgtc
tgtgtctccaataccatccgaagcctgtcgtttgtgccaggtaacgactttgagatgtcc
aaacacccggggctcctgctgatcctgggcaagctgatcctgctgcaccacaaacaccca
gaacggaagcaggcaccactaacttatgagaaggaggaggagcaggaccaaggggtgagc
tgcaacaaggtagagtggtggtgggactgcttggagatgctccgggaaaacaccttagtc
acgctcgccaacatctcggggcagttggacctctccccatacccagagagcatttgtctg
cctgtcctggacggactcctgcactgggcagtctgcccttcagctgaagcccaggaccct
ttttcaaccctgggccccaatgccgtcctctcccctcagagactggtcttggaaaccctc
agcaaactcagcatccaggacaacaatgtggacctgatcctggccactccccccttcagc
cgcctagagaagttgtatagcaccatggtgcgcttcctcagtgaccgaaagaacccggta
tgccgggagatggctgtggtactgctggccaacctggcacagggtgacagcctggcagcc
cgtgccattgcagtacagaagggcagcatcggtaacctcttgggcttcttggaggacagt
ctcgctgctacacaattccagcagagccaggcaagcctgcttcatatgcagaacccaccc
ttcgagccaactagtgtggacatgatgcggcgggctgcccgcgcgctgctggcactggcc
aaggtagacgagaaccactcggagttcacgctgtatgaatcacggctgttggacatctcg
gtatcaccattgatgaactcattggtttcacaagtcatttgcgatgtactgtttttgatt
ggccagtcatga
DBGET
integrated database retrieval system
