Sorex araneus (European shrew): 101557184
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Entry
101557184 CDS
T07854
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
sara
Sorex araneus (European shrew)
Pathway
sara03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sara00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101557184 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sara03019
]
101557184 (XAB2)
03041 Spliceosome [BR:
sara03041
]
101557184 (XAB2)
Messenger RNA biogenesis [BR:
sara03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
101557184 (XAB2)
Spliceosome [BR:
sara03041
]
Complex B
Other components
Prp19-related factors
101557184 (XAB2)
Complex C
101557184 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_12
TPR_2
Suf
TPR_8
TPR_19
TPR_15
ARM_TT21_C
ARM_TT21
TPR_7
DUF5575_C
DHR-2_Lobe_A
Motif
Other DBs
NCBI-GeneID:
101557184
NCBI-ProteinID:
XP_004614838
LinkDB
All DBs
Position
Unknown
AA seq
799 aa
AA seq
DB search
MVAMARPSRTERSDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV
DAIIRGGLTRFTDQLGKLWRSLADYYIRSGHFEKARDVYEEAVRTVMTVRDFTQVFDSYA
QFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW
HKRVALHEGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARIILEK
ATKVSFKQVDDLASVWCECGELELRHESYDQALRLLRKATALPARRAEYFDGSEPVQNRV
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYA
QLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRSIYQKAIEVLS
DEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKEFEVRHGNEDTI
REMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGLDDMKLLEQRAEQLA
AEAERDQPPRAQSKILFVR
NT seq
2400 nt
NT seq
+upstream
nt +downstream
nt
atggtggcgatggcgcgaccgtcgcgtaccgagcggtcggacctcgtcttcgaggaagag
gacctcccctatgaggaggaaatcatgcggaaccagttctccgtgaagtgctggctccgg
tacatcgagttcaaacagggcgcccccaagccgaggctcaatcagctgtacgagcgggcc
ctcaagctgctgccctgcagctacaaactctggtatcggtacctgaaggcgcgccgggca
caggtcaagcaccgctgtgtcaccgaccccgcttatgaagatgtcaacaactgccacgag
agggcctttgtgttcatgcacaagatgccgcgtctgtggctcgattactgccagttcctg
atggaccagggccgggtcacgcacacacgccgcacctttgaccgggcgctgcgggcgctc
cccatcacgcagcactcgaggatctggcctctgtacctgcgctttctgcgctcacatccg
ctgcccgagacggccgtgcggggctaccggcgcttcctcaagctgagccccgagagcgcc
gaggagtacattgagtacctgaagtccagcgaccggctggatgaggcggcgcagcgcctg
gccacggtggtcaacgacgagcgattcgtgtccaaggctggcaagtctaactaccagctc
tggcacgagctctgcgacctcatctcgcagaaccccgacaaggtgcagtccctgaacgtg
gacgccatcatccgcggcggcctcacccgcttcactgaccagctgggcaagctctggcgc
tcgctagccgattactacatccgcagcggccacttcgagaaggctcgggatgtgtacgag
gaggccgtccgcaccgtgatgaccgtgcgcgacttcacccaagtgttcgacagctacgca
cagttcgaggagagcatgattgcggccaagatggagacggcgtcggagctgggccgggag
gaggaggatgacgtggacctggagctgcgcctggcccgcttcgagcagctcatcagccgg
cggcccctgctgctcaacagcgtcctgctgcgccagaacccgcaccacgtgcacgagtgg
cacaagcgcgtggccctgcatgagggccgcccccgcgagattatcaacacctacacggag
gccgtgcagaccgttgaccccttcaaggccacaggcaagccccacacgctgtgggtcgcc
tttgccaagttctacgaggacaatgggcagctggacgacgcccgcatcatcctggagaag
gccaccaaggtgagcttcaagcaggtggacgacctggccagcgtgtggtgcgagtgtggt
gagctggagctgcggcacgagagctatgaccaggctctgcggctgctgcggaaggccaca
gcgctgccggcccgccgtgccgagtactttgacggctccgagccggtgcagaaccgcgtg
tacaagtccctgaaggtgtggtccatgctggccgacctggaggagagcctgggcaccttc
cagtccaccaaggccgtgtacgaccgcatcctggacctgcgcatcgccacgccccagatc
gtcatcaactatgccatgttcctggaggaacacaagtacttcgaggagagcttcaaggct
tatgagcgcggcatctcgctgttcaagtggcccaacgtgtctgacatctggagcacgtac
ctgaccaagttcattgcccgctacgggggccgcaagctggagagggcgcgggacctgttc
gagcaggcgctggatggctgcccccccaaatacgccaagaccctgtacctgctgtacgcg
cagctggaggaggaatgggggctggcccgccacgccatggccgtgtacgagcgcgccacc
cgcgccgtggagcccgcgcagcagtacgacatgttcaacatctacatcaagcgcgcggcc
gagatctacggcgtcacccacacgcgcagcatctaccagaaggccattgaggtgctgtca
gacgagcacgcgcgggagatgtgcctgcgcttcgccgacatggagtgcaagctcggggag
atcgaccgcgcccgcgccatctacagcttctgctcgcagatctgcgacccccggaccacc
ggggccttctggcagacgtggaaggagttcgaggtgcggcacgggaacgaggacaccatc
cgcgagatgctgcgcatccgccgcagcgtacaggccacgtacaacacgcaggtcaacttc
atggcctcccagatgctcaaggtgtcgggcagcgccacgggcacggtgtccgacctggcc
ccagggcagagcggcctggacgacatgaagctgctggagcagcgggcagagcagctggcg
gctgaggctgagcgtgaccagccccctcgggcccagagcaagatcctgtttgtgaggtga
DBGET
integrated database retrieval system
