Sorex araneus (European shrew): 101557846
Help
Entry
101557846 CDS
T07854
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
sara
Sorex araneus (European shrew)
Pathway
sara03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sara00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101557846 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sara03041
]
101557846 (SF3B1)
03036 Chromosome and associated proteins [BR:
sara03036
]
101557846 (SF3B1)
Spliceosome [BR:
sara03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
101557846 (SF3B1)
Complex B
101557846 (SF3B1)
Complex C
U2 SnRNP specific factors
101557846 (SF3B1)
Chromosome and associated proteins [BR:
sara03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
101557846 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
TALPID3
Motif
Other DBs
NCBI-GeneID:
101557846
NCBI-ProteinID:
XP_004601297
LinkDB
All DBs
Position
Unknown
AA seq
1304 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK
KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE
LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAK
GSETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTE
RDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPI
GTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAG
YVPIRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLV
DVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLM
SPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNL
AKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQA
RHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYG
IESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSP
DEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVEL
ANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAF
QEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAV
VMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRL
TPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNT
FGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE
LNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVY
GFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARK
VRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagactcacgaagatattgaagcacagattcgagaaattcaaggc
aagaaggcggctcttgatgaagctcaaggagtgggccttgattctacaggttactatgac
caggaaatttatggtggaagtgacagcagatttgctggatatgtaacatcaattgctgcc
acagaacttgaagatgatgatgatgactactcatcttccacaagcttgcttggtcagaag
aagccaggatatcatgcccctgtggcattgcttaacgatattccacagtcaactgaacag
tatgacccatttgctgaacaccggccgccgaagattgcagatcgggaagatgagtacaaa
aagcacaggcggaccatgataatttccccagagcgtcttgatccttttgcagatggaggg
aagacccctgatcctaaaatgaatgctagaacttacatggatgtaatgcgagaacaacat
ttaactaaagaagagagagagattaggcaacaactagcagaaaaagctaaagcaggagaa
ctaaaagtcgtcaatggagcagcagcttcccagcctccttcaaagcgaaaacggcgttgg
gatcaaacagctgatcagactcctggtgccactcccaaaaaactgtcaagttgggatcaa
gcagagacaccaggacatactccttccttgcgatgggatgagacaccaggccgtgcaaag
ggaagtgagactccaggagcaaccccaggctcaaaaatctgggatcctacacctagtcac
acaccagccggagctgctactcctggacgaggcgatacaccaggccatgcgacaccaggc
catggaggcgcaacttctagtgctcgtaaaaacagatgggatgagacacctaaaacagaa
cgagatactcctggacatggaagtggatgggctgaaacacctcgaactgacagaggtggt
gattcaattggtgaaacaccgactccaggagccagtaaaagaaagtcccgttgggacgaa
acaccagcaagtcagatgggtggaagcactcctgttctaacacctggaaaaacacctatc
ggcacaccagccatgaacatggccaccccaactccaggtcacataatgagcatgactcct
gaacagcttcaggcatggcgatgggaaagagaaattgatgagagaaatcgccccctttct
gatgaagagttggatgctatgttcccagaaggatataaggtacttccccctccagctggt
tatgtccctattcgaactccagctcgaaaactgacagcaacaccaacacctttgggcggt
atgactggtttccacatgcaaactgaagataggactatgaagagtgttaatgaccagccg
tctggaaatcttccatttttaaagcctgatgatattcagtacttcgataaacttttggtt
gatgttgatgaatcaacacttagtccagaagagcaaaaagagagaaaaattatgaagttg
cttttaaaaattaagaatggaacgcctccaatgagaaaggctgcattgcgtcaaattact
gataaagcacgtgaatttggagctggtcctttgtttaatcagattcttcctctactgatg
tctcctacacttgaagatcaggaacgtcatttacttgtgaaagttattgacagaatattg
tacaaacttgatgacttagttcgaccttatgtgcataagatccttgtggtcattgaaccg
ttgttgattgatgaagattactatgctagagttgaaggcagagagattatttctaatttg
gcaaaggctgctggtctggctactatgatttcgaccatgagacctgatatagataacatg
gatgagtatgtccgtaacacaacagctagagcttttgctgttgtagcctctgctcttggc
attccttcattgttgccctttttaaaagctgtgtgcaaaagtaagaagtcctggcaagca
agacacactggcattaagatcgtacagcagatagctattcttatgggctgtgccattttg
cctcatctcagaagtttagtggaaatcattgagcatggtcttgtggatgaacagcagaaa
gttcgaaccattagtgctctggccattgctgccttggctgaagcagcaaccccttacggt
attgaatcttttgattctgtgttgaagcctctgtggaagggtattcgccagcacagagga
aagggtctggctgctttcttaaaggctattgggtatcttattcctctcatggatgccgaa
tatgccaactactacactagagaggtgatgttaatccttattcgagaattccaatctcct
gatgaagaaatgaagaaaattgtgctgaaggtggtaaagcagtgttgtggaactgatggt
gtagaggcaaattacattaaaacagagatactccctcctttttttaaacacttttggcaa
cacagaatggctttggacagacgaaactaccgacagttagttgataccactgtagagttg
gcaaataaagtaggtgctgcagaaattatatccagaattgtggatgatctgaaagatgaa
gctgagcagtacagaaaaatggtgatggagacaattgaaaaaatcatgggcaacttggga
gcagcagatattgatcataaacttgaagaacagttgattgatggtattctttatgccttc
caagaacagactactgaggactcagtaatgttgaatggctttggcacagtggttaatgct
cttggtaaacgagttaaaccttacttgcctcagatctgtggcacagttttatggcgttta
aataacaaatcggcaaaagtcaggcaacaggcagctgacttgatctctcgaactgcagtt
gtcatgaaaacttgtcaagaggaaaaattgatgggacatttaggtgttgtcttgtatgag
tatttgggtgaagagtatcctgaagtattgggcagcattcttggagcactgaaggccatt
gtaaatgtaataggtatgcataagatgaccccaccaattaaagatttactgcctagactt
acccccatcttaaagaacaggcatgaaaaagtccaagaaaattgtattgatcttgttgga
cgtattgctgacaggggtgctgaatatgtatctgcaagagaatggatgaggatttgtttc
gagcttttagagctcttaaaagctcataaaaaagctattcgtagagcaactgtcaataca
tttggttatattgccaaggccattggtcctcatgatgtattggctacacttctgaacaat
ctcaaagttcaagaaagacaaaaccgagtttgtaccactgtagcaatagctattgttgct
gaaacatgctcacccttcacagtactacctgccttaatgaatgaataccgagttcctgaa
ctgaatgttcaaaatggagtgttaaaatcactttccttcttgtttgaatatattggtgaa
atgggaaaggactacatttatgctgtaacacctttacttgaagatgctttaatggatagg
gaccttgtacacagacagacagctagtgcggtggtgcaacacatgtcgcttggggtatat
ggattcggttgtgaagattccctgaatcatttattaaattatgtatggcccaatgtgttt
gagacgtctccccatgtaatccaggcagttatgggagcattggaaggcctaagagttgct
attggaccttgtagaatgttgcagtattgtttacagggattatttcacccagcccgaaaa
gtcagagatgtgtactggaaaatttacaactccatctacattggttcacaggatgctctc
atagcacattatccaagaatctacaatgatgataagaacacctatattcgttatgaactt
gactatatcttgtaa
DBGET
integrated database retrieval system
