Sorex araneus (European shrew): 101558594
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Entry
101558594 CDS
T07854
Symbol
SMARCB1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
sara
Sorex araneus (European shrew)
Pathway
sara03082
ATP-dependent chromatin remodeling
sara03250
Viral life cycle - HIV-1
sara04714
Thermogenesis
sara05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
sara00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
101558594 (SMARCB1)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
101558594 (SMARCB1)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
101558594 (SMARCB1)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
101558594 (SMARCB1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
sara01009
]
101558594 (SMARCB1)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sara03021
]
101558594 (SMARCB1)
03036 Chromosome and associated proteins [BR:
sara03036
]
101558594 (SMARCB1)
Protein phosphatases and associated proteins [BR:
sara01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
101558594 (SMARCB1)
Transcription machinery [BR:
sara03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
101558594 (SMARCB1)
SWI/SNF complex
101558594 (SMARCB1)
Chromosome and associated proteins [BR:
sara03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
101558594 (SMARCB1)
PBAF complex
101558594 (SMARCB1)
SWI/SNF complex
101558594 (SMARCB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
101558594
NCBI-ProteinID:
XP_012787962
LinkDB
All DBs
Position
Unknown
AA seq
348 aa
AA seq
DB search
MFRGSLYKRYPSLWRRLATVEERKKIVASSHGKKTKPNTKDHGYTTLATSVTLLKASEVE
EILDGNDEKYKAVSISTEPPTYLREQKAKRNSQWVPTLPNSSHHLDAVPCSTTINRNRMG
RDKKRTFPLCFDDHDPAVIHENASQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEM
FSEILCDDLDLNPLTFVPAIASAIRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVD
QFEWDMSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVE
IAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRNTRRMRRLANTAPAW
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atgttccgaggttctctgtacaagaggtacccctcactctggaggcggctagccactgtg
gaagagaggaagaaaatagttgcatcgtcacatggtaaaaaaacaaaacctaacactaag
gatcacggatacaccaccctggctaccagtgtgaccttgctgaaagcctcagaggtggaa
gagattctggatggcaatgatgagaagtataaggccgtgtccatcagcacggagcccccc
acctacctcagggaacagaaagctaagaggaacagccagtgggtgcccaccctgcccaac
agctcccaccatctggacgctgtgccgtgttccacaactattaacaggaaccgaatgggc
cgggacaagaagaggaccttccctctgtgctttgatgaccatgacccagctgtgatccat
gagaacgcatcccagcccgaggtgctggtccccatccgtctggatatggagatcgatggg
cagaagcttcgggatgcctttacctggaatatgaatgaaaagctgatgacccctgagatg
ttttcagaaatcctctgtgatgacctggacttgaacccactgacctttgtgccagctatc
gcttctgccatcagacagcaaattgagtcctaccccacagacagcatcctggaggaccaa
tcagaccagcgtgtcatcatcaagctcaacatccatgtgggcaacatctccctggtggac
cagttcgagtgggacatgtctgagaaggagaactctccagagaagtttgctctcaagctg
tgctccgagttggggctagggggtgagtttgtcaccaccattgcctacagcatccgggga
cagctgagctggcatcagaagacctatgccttcagcgagaaccccctgcccactgtggag
atcgccatccggaacacaggcgacgctgaccagtggtgccctctgctggagaccctgacg
gatgccgagatggagaagaagattcgggaccaggacaggaacaccagacggatgaggcgt
ctggccaacactgccccagcctggtaa
DBGET
integrated database retrieval system
