Sorex araneus (European shrew): 101559097
Help
Entry
101559097 CDS
T07854
Symbol
TRIM56
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRIM56
KO
K12026
tripartite motif-containing protein 56 [EC:
2.3.2.27
]
Organism
sara
Sorex araneus (European shrew)
Brite
KEGG Orthology (KO) [BR:
sara00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sara04121
]
101559097 (TRIM56)
Enzymes [BR:
sara01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
101559097 (TRIM56)
Ubiquitin system [BR:
sara04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
101559097 (TRIM56)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-B_box
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_3
zf-C3HC4_4
zf-RING_2
zf-RING_5
ANCHR-like_BBOX
RING_XB3-XBAT31
Phytase-like
DUF3209
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
101559097
NCBI-ProteinID:
XP_004622827
LinkDB
All DBs
Position
Unknown
AA seq
732 aa
AA seq
DB search
MFSKAAPSLLEALSSDFLACKICLEQLRTPKTLPCLHTYCQDCLARLAEGARLRCPECRE
TVPVPPEGVAAFKTNFFVNGLLDLVKARARDLSTDKPACALCPLMGGSGAGGPATARCLD
CADDLCQACADGHRCTRQTHTHRVVDLVGYRAGWYDEEARERQAAQCPQHPGEALRFLCQ
PCAQLLCRECRLDPHLDHPCQPLAEAVRARKPGLEALLAGVDQHVAELEAAQRGEREALA
ALRERAQRVGAQAEEAAEGFLRALLAQKKEVQGQLRAHVDAAEEAARARLGELEEREAAA
RAAAGFARRVLSLGREAEILSLEGAIAQRLQQLQGAPFAASPGPYRLSGLQLDPSLQDPA
CQFLLLSLEEPEPPSAGSLAGAKGEGNKTEKPSAAKPPSQEKTPDAGAQTPKDGRAQTPQ
DESERAPTPRGGRAHRKGKFKDRLKSVSREVSPAPGPSLEGTGLFARPVFSCSFPTRMPG
DKRSPRITGLCPFGPREILVADEQNRALKRFSLNGDYRGSVPVPEGCAPCSVAALQGAVA
FSATARLYLISHDGEVRWRRALSLSQASHAVTAMPSGDRVAVSVSGHVEIYNMEGSLATR
FIPGGKASRGQRALVFLAATPQGHFVGSDWQQNSLVVCDGLGQVIGEYRGPSLHGCQPGS
VSVDKKGYIFLTLRELNKVVVLDPQGSLLGDFLTAYHGLEKPRVTTMVDGRFLVVSLSNG
TIHVFKVRGTDS
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgttctccaaggcggccccctccctgctggaagccctgagcagcgacttcctggcctgc
aagatctgcctggagcagctgcggacgcccaagacgctgccgtgcctgcacacctactgc
caggactgcctggcgcggctggccgagggcgcccggctgcgctgccccgagtgccgcgag
accgtgcccgtgcccccggagggcgtggccgccttcaagaccaacttcttcgtcaacggg
ctcctggacctggtgaaggcccgtgcccgggacctgagcacggacaagccggcttgcgcc
ctgtgtcccctcatggggggcagcggcgccgggggtccggccaccgcccgctgcctggac
tgtgccgacgacctgtgccaggcctgtgccgacgggcaccgctgcacccggcagacccac
acccaccgcgtggtggacctggtgggctacagggccggctggtacgacgaggaagcgcgc
gagcgccaggccgcgcagtgcccgcagcaccccggggaagcgctgcgcttcctgtgccag
ccctgcgcgcagctgctgtgccgggagtgccgcctggacccccacctggaccacccctgc
cagccgctggccgaggccgtgcgcgcgcggaagccgggcctggaggcgctgctggcgggc
gtggaccagcacgtggccgaactggaggcggcgcagcgcggggagcgggaggcgctggcg
gcgctgcgggagcgggcgcagcgcgtgggcgcgcaggccgaggaggctgccgagggcttc
ctgcgcgccctcctggcccagaagaaggaggtgcaaggccagctccgtgcccacgtggac
gccgcggaggaggccgcccgggcgaggctcggggagctggaggaacgggaggcggcggcc
agggcagcggccggcttcgcccgccgggtgctgagtctgggccgcgaggcggagatcctc
tcgctggagggggccatcgcccagaggctgcagcagctgcagggagccccctttgctgcg
tcccctggcccctaccggctttcggggctgcagctcgaccccagcctccaggaccccgcc
tgccagttcctgctgctctccttggaggagcctgagccccccagcgccgggagcctggcc
ggcgcgaaaggcgagggaaacaagaccgagaagccgagcgcagccaagcccccgagtcag
gagaagacccccgatgccggggcccagaccccgaaagacggcagagcccagacaccccaa
gacgagtctgagagagccccgacaccccgcggcggcagggcccacaggaaggggaagttc
aaggacaggctgaagtccgtgtccagggaggtcagccctgcacctgggcccagcctggag
ggcaccggcctgttcgccagacccgtgttctcctgcagcttccccacgcgcatgcccggg
gacaagcgttccccccgcatcactgggctctgtcccttcgggccccgggagatcctggtg
gccgatgagcagaaccgggcgctgaagcgcttctccctcaacggcgactaccgaggctcc
gtgccggtgcccgagggctgtgccccctgcagcgtggccgccctgcagggcgccgtggcc
ttctcagccactgcccggctctacctcatcagccacgacggtgaggtgcggtggcgccgg
gcgctgagcctctcccaggccagccacgcagtgaccgccatgcccagcggtgaccgggtg
gccgtcagcgtgtctggccacgtggagatctacaacatggaaggcagcctggccacacgc
ttcatccccgggggcaaggccagccgtggccagcgggccctggtgttcctggctgccacc
ccacagggacacttcgtggggtccgattggcagcagaatagtttagtggtctgcgacggg
ctgggccaggtcatcggggagtaccgggggccgagtcttcatggctgccagccgggctcc
gtgtctgtggataagaagggctacatcttcctgaccctccgagagctcaacaaggtggtg
gtcttggacccccagggctcactgctgggagatttcctcacggcctaccatggcctggag
aagccgcgggtgaccacgatggtggacggccgcttcctggttgtgtccctcagcaacggg
accattcacgtctttaaggttcgaggcactgacagttaa
DBGET
integrated database retrieval system
