Sorex araneus (European shrew): 101559232
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Entry
101559232 CDS
T07854
Symbol
DDX1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
sara
Sorex araneus (European shrew)
Brite
KEGG Orthology (KO) [BR:
sara00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sara03041
]
101559232 (DDX1)
03016 Transfer RNA biogenesis [BR:
sara03016
]
101559232 (DDX1)
Enzymes [BR:
sara01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101559232 (DDX1)
Spliceosome [BR:
sara03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
101559232 (DDX1)
Transfer RNA biogenesis [BR:
sara03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
101559232 (DDX1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
DUF5766
CMS1
Motif
Other DBs
NCBI-GeneID:
101559232
NCBI-ProteinID:
XP_004609407
LinkDB
All DBs
Position
Unknown
AA seq
734 aa
AA seq
DB search
MGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYE
TLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRATK
GLTKGKHYYEVSCHDQGLCRVGWSSMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEF
TMHDTIGCYLDIDKGQVKFSKNGKDLGLAFEIPPHLKNQALFPACVLKNAELKFNFGEED
FKFPPKDGFVGLSKASDSFVVKSQHTGSAQVAQTKFLPNAPKALIVEPSRELAEQTLNNV
KQFKKYIDNPKLRELLIIGGVAAREQLSVLDNGVDIVVGTPGRLDDLVSTGKLNLSQVRF
LVLDEADGLLSQGYSDFINRMHSQIPQITSDGKRLQVIVCSATLHSFDVKKLSEKIMHFP
TWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKNHIRTDEVHAKDNTRPGGNSPEMWS
EAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFMQQGGGPDKKGHQFSCVCLH
GDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRV
GRAERMGLAISLVATEKEKVWYHVCSNRGKGCYNTRLKEEGGCTIWYNEMQLLSEIEEHL
NCTISQVEPDIKVPVDEFDGKVTYGQKRAVGGGNYKGHVDVLAPTVQELAALEKEAQTSF
LHLGYLPNQLFRTF
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttatgcctgagattgcacaagctgtggaagagatggattggcttctcccaact
gatatccaggctgaatctatcccattgatcctgggaggaggagatgtccttatggctgct
gaaacaggaagtggaaaaactggtgctttcagtatcccagtcatccagatagtttatgaa
actctgaaagaccagcaggaaggcaaaaaaggaaaaacaacaattaaaactggtgcttca
gtgctcaacaaatggcagatgaacccatatgatagaggatctgcttttgcgattggttca
gacggtctgtgttgtcagagccgagaagtaaaggagtggcatgggtgtagagctacgaaa
ggattaacaaaaggaaaacactactatgaagtctcctgtcatgatcaagggttatgccga
gtggggtggtcttctatgcaggcctccttagaccttggtactgacaagtttggatttggt
tttggtggaacagggaaaaaatcccataacaaacagttcgataattatggagaggagttc
actatgcatgataccattggatgttacctagatatagataaaggacaagtcaagttctcc
aaaaatggaaaagaccttggtctggcctttgaaatacctccacatttgaagaaccaagcc
ctttttcctgcctgtgttctcaagaacgcggagctgaagtttaattttggtgaagaagac
tttaagttcccaccgaaggatggtttcgttggtctttccaaggcatctgatagtttcgtt
gtcaaatcgcagcatacaggtagtgcacaggtggcacaaacaaaatttcttcccaatgca
ccgaaagctctcattgtggaaccctctcgagagttagctgagcaaactttgaataacgtc
aagcagtttaagaaatacattgataacccaaaattaagggagctgctgataattggaggt
gtggcagcacgcgagcagctttctgttttggataatggggtagatatagttgttggcact
ccgggaagactagatgacttggtgtcgactggaaaactgaacttatctcaagttagattc
ctcgtcctggatgaagctgatggacttctttctcaaggttactccgattttatcaatagg
atgcacagccagattcctcagattacctcagatggaaaaagacttcaggtgattgtttgc
tctgccactctgcattcttttgatgtgaagaagctgtcagagaagatcatgcattttccc
acctgggtggacttgaaaggagaagattccgtcccggacaccgtgcaccacgtcgtcgtc
cccgtgaaccctaaaactgaccgactctgggaaaggctcgggaagaaccacatcaggact
gatgaagtacacgcaaaagacaatacaagacctggtggtaacagtccagagatgtggtct
gaagctattaaaatcctgaagggggagtatgctgttcgggcaatcaaggaacacaagatg
gatcaagcaattattttttgtagaaccaaaattgactgtgataacttggagcaatatttc
atgcaacaaggaggagggcctgataaaaaaggacaccagttctcatgtgtttgtctccat
ggtgacagaaagcctcacgagagaaagcaaaacttggaaagatttaagaaaggagatgta
agattcttgatttgtacagatgtagctgccagaggaattgacatccacggtgttccttac
gttataaatgtcaccttgcctgatgagaagcagaactatgttcacagaattggccgagta
ggaagagctgaaaggatgggtctggccatttccctggtggcaacagaaaaagagaaggtg
tggtaccatgtatgtagtaatcgcggaaaagggtgttacaacacaagactcaaggaagaa
ggtggctgtaccatttggtacaatgagatgcagttgctctctgagattgaagaacacctc
aactgcaccatttctcaggtggagccagatataaaggtgccagtcgatgaatttgatggg
aaagttacctatggccaaaaaagggctgttggtggtggaaactataaaggccatgtggat
gtattggcacctactgttcaggagttggctgcccttgaaaaggaggcgcagacgtcgttc
ctgcatcttggctaccttccgaaccagctgttcagaaccttttga
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