Stenotrophomonas aracearum: PDM28_00685
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Entry
PDM28_00685 CDS
T10111
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
sarc Stenotrophomonas aracearum
Brite
KEGG Orthology (KO) [BR:
sarc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sarc03032
]
PDM28_00685
03400 DNA repair and recombination proteins [BR:
sarc03400
]
PDM28_00685
Enzymes [BR:
sarc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PDM28_00685
DNA replication proteins [BR:
sarc03032
]
Prokaryotic type
DNA Topoisomerases
PDM28_00685
DNA repair and recombination proteins [BR:
sarc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PDM28_00685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
DUF7508
Motif
Other DBs
NCBI-ProteinID:
WNH48884
LinkDB
All DBs
Position
155186..156265
Genome browser
AA seq
359 aa
AA seq
DB search
MPARLATPEAAAARDAGLRYVSDEQPGIARRKAGKGFSYRDADGHAVRDAATLARIRALA
IPPAYTEVWICASANGHLQATGRDARRRKQYRYHPDWARVRGDGKFDRVIAFGQALPTLR
RRLRRDLKLPGYPQDKVLAIVVALLAETLVRVGNPEYARDNRSYGLTTLRNRHLEMVKGG
RARMRFRGKSGQQQEVEIDDTQLAKLIKGCQQLPGQALFQYRDDDGTVQPVDSGQVNAYL
RDAMGADFSAKDFRTWGGTMAALRQFAATALPEAPSERALAALQKQVVCEVAARLGNTPA
VCRKAYIDPSVFDGWRDGALVKLAGLRGERQWEQATLRFLRTARKAVKKAKPAKNTKPA
NT seq
1080 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcacgccttgctacccccgaagccgccgccgcccgcgacgccggcctgcgttac
gtcagcgacgagcagcccggcatcgcccggcgcaaggcgggcaagggcttcagttaccgc
gatgcggatggccatgcggtacgcgatgccgccacactggcgcggatccgggcgctggcg
attccgccggcctacaccgaggtgtggatctgcgcctcggccaacggccacctgcaggcc
accggccgcgacgcgcgccgccgcaagcagtaccgctaccacccggactgggcgcgggtg
cgcggcgacggcaagttcgaccgggtgatcgccttcggccaggcgctgccgaccctgcgc
cggcgcctgcgccgcgacctcaagctgccgggctacccgcaggacaaggtgctggccatc
gtggtcgcgctgctggccgaaaccctggtgcgggtcggcaaccccgagtacgcgcgcgac
aaccgctcctacgggctgaccacgctgcgcaaccgccacctggagatggtcaagggtggt
cgcgcgcgcatgcgcttccgcggcaagtccggccagcagcaggaggtggagatcgacgac
acgcagctggcgaagctgatcaagggctgccagcagctgccggggcaggcgctgttccag
taccgcgacgacgacggcaccgtgcagccggtggactccggccaggtcaacgcctacctg
cgcgatgcgatgggcgcggatttcagcgccaaggacttccgcacctggggcggcaccatg
gccgcactgcgccagttcgccgcgaccgcgctacccgaagcgcccagcgaacgcgcgctg
gccgcgctgcagaagcaggtggtgtgcgaagtggcggcccgcctgggcaacaccccggcg
gtgtgccgcaaggcctacatcgaccccagcgtgttcgacggctggcgcgacggcgccctg
gtgaagctggccggcctgcggggcgagcgccagtgggaacaggccaccctgcgcttcctc
cgcaccgcccgaaaagcagtgaagaaagcaaaacccgcgaaaaacaccaaacccgcgtag
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