Stenotrophomonas aracearum: PDM28_03960
Help
Entry
PDM28_03960 CDS
T10111
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sarc Stenotrophomonas aracearum
Pathway
sarc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sarc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PDM28_03960 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sarc03021
]
PDM28_03960 (rpoC)
03400 DNA repair and recombination proteins [BR:
sarc03400
]
PDM28_03960 (rpoC)
Enzymes [BR:
sarc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PDM28_03960 (rpoC)
Transcription machinery [BR:
sarc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PDM28_03960 (rpoC)
DNA repair and recombination proteins [BR:
sarc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PDM28_03960 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
WNH49492
UniProt:
A0ABY9YFL0
LinkDB
All DBs
Position
870546..874781
Genome browser
AA seq
1411 aa
AA seq
DB search
MKDLLNLFNQQRQTLDFDAIKIALASPDLIRSWSFGEVKKPETINYRTFKPERDGLFCAA
IFGPVKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFEAYVVTEPGLTALERRQLLTEEQFLQARQEHGDDFDAAM
GAEAVYELLRTIDLQSEMTRLREEIASTGSETKLKRLTKRIKLVEAFLESGNRPEWMVMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPY
LRLHQCGLPKKMALELFKPFVFAKLQRRGLATTIKAAKKLVEREEAEVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRALENKKGEGMAFANIAEVKRAYDNR
VVELHAKVKVRITEVVTDENGDKQKKSSIVETTIGRALLAEILPEGLPFALANTELTKKN
ISRLINSSYRQLGLKDTVVFADKLMYTGFAYATRAGVSIGIDDMLIPDEKRGILTEAEAE
VLEIQEQYQSGLVTAGERYNKVVDIWSRTNERIAKAMMDTIGTEKVVNAKGETIDQKSMN
SLYIMADSGARGSQAQIRQLAGMRGLMARPDGSIIETPIKANFREGLNVQEYFNSTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITEVDCGTTEGLTMTPIVEGGDVVEPLKDRVL
GRVVAEDVFLPGNDEDPIVTRNTLLDEAWVAKLEDAGVQSIKVRSTISCESAFGVCANCY
GRDLARGHLVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAVDNITVKTTGSVK
FNNLKSVEHANGSLVAVSRSGEISVLDAHGRERERYKLPYGSMIATKDGDAVKAGQTVAN
WDPHNHPIVSEVAGFIRFIDFIDGVTVIEKTDELTGLASREITDPKRRGSQAKELRPIVR
IVDAKGNDLTIPNTDLPAQYLLPPRSIVNLQDGAAVGVGDVVAKIPQEASKTRDITGGLP
RVADLFEARKPKDPAILAERSGIISFGKDTKGKQRLIIKDTDGSEHEELIPKYRQVIVFE
GEHVTKGETIVDGEPSPQDILRLLGVEPLAAYLVKEIQDVYRLQGVKINDKHIEVITRQM
LRKVEITDQGSSKFLNGEQAERQRVIEENARLTTRNELIARFDPVLLGITKASLATESFI
SAASFQETTRVLTEAAVRGTSDNLRGLKENVIVGRLIPAGTGLAYHANRRRNASGLTESE
LQTLAGSPVVAEAAPVAAAVETAPEVDSTDE
NT seq
4236 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacctgctcaacctcttcaaccagcagcgccagacgctggacttcgacgcgatc
aagatcgcgctggcctcgccggacctgatccgttcgtggtccttcggcgaagtgaagaag
ccggaaaccatcaactaccgtaccttcaagccggagcgtgacggcctgttctgcgccgcc
atcttcgggccggtcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagcac
cgcggcgtggtctgcgaaaagtgcggcaccgaagtgaccctggccaaggtgcgccgtgag
cgcatgggccacatcgacctggcctcgccggtcgcgcacatctggttcctcaagtcgctg
ccgtcgcgcatcggcctgatgctggacatgaccctgcgcgacatcgagcgcgtgctgtac
ttcgaagcctacgtggtgaccgagccgggcctgaccgccctggagcgccgccagctgctg
accgaagaacagttcctgcaggcccgccaggagcacggcgacgacttcgacgccgccatg
ggcgccgaggccgtgtacgaactgctgcgcaccatcgacctgcagtcggaaatgacccgc
ctgcgcgaagaaatcgccagcaccggttcggaaaccaagctcaagcgcctcaccaagcgc
atcaagctggtcgaagccttcctggaatcgggcaaccgtccggagtggatggtcatgacc
gtgctgccggtgcttccgccggacctgcgtccgctggtgccgctggacggtggccgcttc
gcgacctccgacctgaacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctgcgc
cgcctgctcgagctgaacgcgccggacatcatcgtgcgcaatgaaaagcgcatgctgcag
gaatcggtcgatgcgctgctggacaacggccgtcgcggccgtgccatcaccggcaccaac
aagcgcccgctgaagtcgctggccgacatgatcaagggcaagcagggtcgcttccgccag
aacctgctgggcaagcgcgtggactactcgggccgttcggtcatcgtggtcggtccgtac
ctgcgcctgcaccagtgcggcctgccgaagaagatggcgctggaactgttcaagccgttc
gtgttcgccaagctgcagcgtcgtggcctggccaccaccatcaaggccgccaagaagctg
gtcgagcgcgaagaagccgaagtctgggacatcctggaagaggtcatccgcgaacacccg
gtcatgctgaaccgtgcgccgaccctgcaccgcctgggcatccaggcgttcgagccggtg
ctgatcgaaggcaaggcgatccagctgcatccgctggtctgtactgcgttcaacgccgac
ttcgacggtgaccagatggccgtccacgtgccgctctcgctggaagcccagctggaagcg
cgtgcgctgatgatgtccaccaacaacatcctgtcgccggccaacggcgagccgatcatc
gtgccgtcgcaggacgtggtgctgggtctgtactacatgacccgcgccctggaaaacaag
aagggcgagggcatggccttcgccaacatcgccgaagtgaagcgcgcctacgacaaccgc
gtggtggaactgcacgccaaggtcaaggtccgcatcaccgaagtggtgaccgacgagaac
ggcgacaagcagaagaagagctcgatcgtggagaccacgatcggtcgcgccctgctggcc
gaaatcctgccggaaggcctgccgttcgcgctggccaacaccgagctgaccaagaagaac
atcagccgcctgatcaactccagctaccgccagctgggcttgaaggacaccgtggtgttc
gccgacaagctgatgtacaccggcttcgcctacgcaacccgtgcgggcgtgtcgatcggt
atcgacgacatgctgatcccggacgagaagcgcggcatcctcaccgaggccgaagccgaa
gtgctggaaatccaggagcagtaccagtcgggcctggtcaccgccggtgagcgttacaac
aaggtggtcgacatctggtcgcgtaccaatgaacgcatcgccaaggcgatgatggacacc
atcggtaccgagaaggtggtcaatgccaagggcgagaccatcgaccagaagtcgatgaac
tcgctgtacatcatggccgactccggtgcgcgaggcagccaggcgcagatccgccagctg
gccggcatgcgtggcctgatggcccgtccggatggctcgatcatcgaaacgcccatcaag
gcgaacttccgtgaaggcctgaacgtgcaggagtacttcaactccacccacggtgcccgt
aagggtctggccgataccgcgctgaagaccgcgaactcgggttacctgacccgtcgactg
gttgacgtggcgcaggacgtggtcatcaccgaagtggattgcggtaccaccgaaggcctg
accatgaccccgatcgtggaaggcggcgacgtcgtggagccgttgaaggaccgcgtgctg
ggtcgtgtcgtggccgaggacgtgttcctgccgggcaacgacgaagatccgatcgtgacc
cgcaacaccctgctcgacgaagcctgggtcgccaagctggaagacgccggcgtgcagagc
atcaaggtgcgctcgaccatcagctgcgaatcggccttcggcgtgtgcgccaactgctac
ggtcgcgacctggcccgtggccacctggtcaacatcggcgaagcggtcggcgtcatcgcc
gcgcagtcgatcggtgagccgggtacccagctgaccatgcgtaccttccacatcggtggt
gcggcatcgcgtgcggcagccgtggacaacatcacggtcaagaccaccggttcggtgaag
ttcaacaacctgaagtcggtcgaacacgccaatggttccctggtcgcggtctcgcgctcg
ggtgaaatctcggtgctcgacgcgcacggccgtgagcgtgagcgttacaagctgccgtac
ggctcgatgatcgcgaccaaggacggcgacgcggtcaaggctggccagaccgtggccaac
tgggatccgcataaccacccgatcgtttcggaagtggccggtttcatccgcttcatcgac
ttcatcgacggcgtcaccgtcatcgagaagaccgacgaactgaccggcctggcgtcgcgt
gaaatcaccgacccgaagcgtcgtggttcgcaggccaaggagctgcgcccgatcgtgcgc
atcgtggatgccaagggcaatgacctgaccatcccgaacaccgatctgccggcccagtac
ctgctgccgccgcgttccatcgtcaacctgcaggacggcgctgccgtcggcgtgggcgac
gtggtcgccaagatcccgcaggaagcgtccaagacccgtgacatcaccggtggtctgccg
cgcgtggccgatctgttcgaagcgcgcaagccgaaggatccggcgatcctggccgagcgt
tcgggcatcatcagcttcggcaaggacaccaagggcaagcagcgcctgatcatcaaggac
accgatggttcggaacacgaagagctgatcccgaagtaccgccaggtgatcgtgttcgaa
ggcgagcacgtgaccaagggcgaaaccatcgtggacggcgagccgagcccgcaggacatc
ctgcgcctgctgggtgtcgaaccgctggcggcctacctggtcaaggaaatccaggacgtg
taccgcctgcagggcgtgaagatcaacgacaagcacattgaagtgatcacccgccagatg
ctgcgcaaggtcgaaatcaccgaccagggcagcagcaagttcctgaatggcgagcaggcc
gagcgccagcgcgtcatcgaggaaaatgcacgcctgaccacccgcaacgagctgatcgcc
cgtttcgacccggtcctgctgggcatcaccaaggcgtcgctggcgaccgagtcgttcatc
tcggccgcgtcgttccaggaaaccacccgcgtgctgaccgaagctgccgtccgcggcacc
tcggacaacctgcgcggcctgaaggaaaacgtcatcgtcggccgcctgatcccggccggt
accggcctggcctaccacgccaaccgtcgtcgcaacgcctccgggctgaccgagtcggag
ctgcagaccctggccggctcgccggtcgtggctgaagcggcaccggtggccgcagcggtg
gaaaccgctccggaagtcgattcgaccgacgagtga
DBGET
integrated database retrieval system
