Stenotrophomonas aracearum: PDM28_04110
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Entry
PDM28_04110 CDS
T10111
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
sarc Stenotrophomonas aracearum
Pathway
sarc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sarc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PDM28_04110 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sarc03021
]
PDM28_04110 (rpoA)
03400 DNA repair and recombination proteins [BR:
sarc03400
]
PDM28_04110 (rpoA)
Enzymes [BR:
sarc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PDM28_04110 (rpoA)
Transcription machinery [BR:
sarc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PDM28_04110 (rpoA)
DNA repair and recombination proteins [BR:
sarc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PDM28_04110 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
WNH49520
LinkDB
All DBs
Position
892507..893505
Genome browser
AA seq
332 aa
AA seq
DB search
MTVTANQVLRPRGPQIERLTDTRAKVVIEPLERGYGHTLGNALRRVLLSSIPGFAITEVE
IDGVLHEYTTLEGLQEDVLEVLLNLKDVAIRMHTGDSATLSLSKQGPGVVTAADIKVDHN
VEILNTDHVICHLTKDTAVNMRLKIERGFGYQPAAARRRPDEETRAIGRLVLDASFSPVR
RVAYSVEAARVEQRTDLDKLVLDIETNGTIDAEEAVRTAADILSDQLSVFGDFTHRDRGA
AKPANNGVDPVLLRPIDDLELTVRSANCLKAESIYYIGDLIQKTEVELLKTPNLGKKSLT
EIKEVLAQRGLSLGMKLENWPPAGVAQHGMLG
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atgacggttaccgccaaccaggttctgcgtcctcgcggtccgcagatcgaacgccttacc
gacacccgcgccaaggtcgttatcgaacccttggagcgtggttacgggcatacgctgggc
aacgccctgcgtcgcgtgctgctgtcgtccatcccgggcttcgccatcacggaagtcgag
atcgacggcgtcctgcacgagtacaccaccctcgaaggcctgcaggaggacgttcttgaa
gtcctgctcaacctgaaggacgtggcgatccgtatgcacaccggcgacagcgctactctg
tcgctgtccaagcagggtccgggtgtcgtgaccgctgccgatatcaaggtcgaccacaac
gtcgagatcctcaacacggatcatgtcatctgccacctgaccaaggacacggcagtcaac
atgcgcctgaagatcgagcgtggtttcggctaccagccggcggccgcgcgtcgtcgtccg
gacgaagaaacccgtgccatcggtcgtctggtcctggacgcctcgttctcgccggtccgt
cgcgtcgcctattcggtggaagcggcccgcgtcgaacagcgtaccgacctggacaagctg
gtgctggacatcgaaaccaacggcacgatcgatgccgaggaagccgtgcgcaccgccgcc
gacatcctcagcgatcagctgtcggtgtttggtgacttcacccaccgcgaccgcggtgcg
gccaagccggccaacaacggcgtggatccggtgctgctgcgcccgatcgacgacctggaa
ctgaccgtgcgttcggcgaactgcctgaaggccgagagcatctactacatcggcgatctg
atccagaagaccgaagtggagctgctcaagaccccgaacctcggcaagaagtcgctgacc
gagatcaaggaagtcctcgcgcagcgtggtctttcgctcggcatgaagctggagaactgg
ccgccggccggtgtcgcccagcacggcatgctcggctga
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