Stenotrophomonas aracearum: PDM28_04390
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Entry
PDM28_04390 CDS
T10111
Name
(GenBank) HU family DNA-binding protein
KO
K03530
DNA-binding protein HU-beta
Organism
sarc Stenotrophomonas aracearum
Brite
KEGG Orthology (KO) [BR:
sarc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sarc03032
]
PDM28_04390
03036 Chromosome and associated proteins [BR:
sarc03036
]
PDM28_04390
03400 DNA repair and recombination proteins [BR:
sarc03400
]
PDM28_04390
DNA replication proteins [BR:
sarc03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
PDM28_04390
Chromosome and associated proteins [BR:
sarc03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
PDM28_04390
DNA repair and recombination proteins [BR:
sarc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
PDM28_04390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
DUF2267
HU-CCDC81_euk_2
DUF6927
HU-CCDC81_bac_2
HU-CCDC81_euk_1
Motif
Other DBs
NCBI-ProteinID:
WNH49567
LinkDB
All DBs
Position
953935..954207
Genome browser
AA seq
90 aa
AA seq
DB search
MNKTELIDAVAETADLTKADSARAVDAVIAAVTKALKGGDAVTLVGFGTFQVRDRAARTG
RNPKTGDTIKIAASKNPSFKAGKALKDAVN
NT seq
273 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagaccgaattgatcgacgccgttgccgaaaccgccgacctgaccaaggccgat
tcggctcgcgccgtcgatgccgtcatcgctgccgtcaccaaggccctgaagggcggcgac
gcagtgaccctggtgggcttcggtacgttccaggtgcgtgaccgcgccgctcgtaccggc
cgcaacccgaagaccggcgacaccatcaagatcgctgcgtcgaagaatccgtcgttcaag
gctggcaaagccctgaaggatgccgtaaactaa
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