Stenotrophomonas aracearum: PDM28_06120
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Entry
PDM28_06120 CDS
T10111
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sarc Stenotrophomonas aracearum
Pathway
sarc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sarc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PDM28_06120 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sarc03400
]
PDM28_06120 (mfd)
Enzymes [BR:
sarc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PDM28_06120 (mfd)
DNA repair and recombination proteins [BR:
sarc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PDM28_06120 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AAA_30
Cas3-like_C_2
SWI2_SNF2
AAA_16
RecG_dom3_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
WNH49881
LinkDB
All DBs
Position
complement(1313123..1316590)
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AA seq
1155 aa
AA seq
DB search
MSRTSYPAPPLPRSGQLRAWWRAPASPTALAWYIARAADAHAGPLLVIARDNHGANQIES
DLRTLLGSASDLPVVAFPDWETLPYDAFSPHPDIISQRLAALHQLPTLKRGIVVVPVQTL
LQQLAPLKYIIGGSFDLKVGQRLDLDAEKRRLEAAAYRNVPQVMDPGDFAVRGGLLDVFP
MGADAPLRVELLDEDIDSIRAFDPESQRSLDKVDAVRMLPGREVPLDELSVSRVLATLRE
RFDVDTRRSALYQDLKAGLAPAGVEYYLPLFFDETATLFDYLQPNALPVIANGVGEAAAS
FWAQTQNRYEQRRHDVERPLLAPSELYLSPEALNAHLNTLPRIEVWGADHARIEEASPLG
DQPLPPLPVAARDAPAGEALKSFIGHYPGRVLIAADSPGRREALLEVLLAAELKPPVVAD
LPTFLADDSQRFAITVAPLEDGFALDMPPLAVLTERQLFPERAGQTRRSRRAGREPEAII
RDLGELTEGAPIVHEDHGVGRYRGLIVLDAGGMPGEFLEIEYAKGDRLYVPVAQLHLISR
YSGASPETAPLHSLGGEQWSKAKRRAAEKVRDVAAELLEIQARRRARAGLALHVDRAMYE
PFAAGFPFEETQDQIAAIEATLRDLASSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQ
VAVLVPTTLLAEQHYRNFRDRFADWPLRVEVLSRFKTAKEIKAELEKVAAGTIDVIIGTH
RLLQPDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIPRTLNMAMAGLR
DLSIIATPPPNRLAVQTIITAWDNALLREAFQRELSRGGQLYFLHNDVESIGRMQRDLAE
LVPEARIGIAHGQMPERELERVMLDFQKQRYNVLLSTTIIESGIDIPNANTIIINRADRF
GLAQLHQLRGRVGRSHHRAYAYLVVPDKRSMTPDAEKRLEAISSMDSLGAGFTLATHDLE
IRGAGELLGEDQSGQMAEVGFSLYTELLERAVRSIRLGKLPDLDAGEEVRGAEVELHVPA
LIPDDYLPDVHTRLTLYKRISSARDSGELRELQVEMIDRFGLLPDAAKHLFAVAELKLQC
NALGIRKLELGENGGRIVFEAQPRIDPMAVIQMIQKQPKLYTMDGPDKLRIKVPLPLPED
RFNAAKALLTTLTPG
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgtcacgcacttcctatcccgctccgccgctgccccgttccgggcagctccgcgcctgg
tggcgcgctcctgcatcgccgacggcgctggcgtggtacatcgcgcgcgccgccgatgcg
catgccggcccgctgctggtcatcgcccgcgacaaccacggcgccaaccagatcgagtcc
gacctgcgcaccctgctgggcagcgcgtcggacctgccggtggtggcgttcccggactgg
gaaacgctgccgtacgacgccttcagcccgcacccggacatcatctcgcaacgcctcgcc
gccctgcaccagctgcccacgctcaagcgcggcatcgtggtggtgccggtgcagacgctg
ctgcagcagctggccccgctcaagtacatcattggtggcagcttcgacctgaaggtcggg
cagcgccttgacctggacgcagagaagcgccgccttgaagcggccgcctaccgcaacgtg
ccgcaggtgatggacccgggcgatttcgccgtgcgcggcggcctgctcgacgtgttcccg
atgggtgccgacgcgccgctgcgggtcgagctgctcgacgaggacatcgattcgatccgc
gcgttcgacccggaaagccagcgttcgctggacaaggtcgacgcggtgcgcatgctgcct
ggccgtgaggtgccgctggacgagctgagcgtgtcgcgggtgctggccaccctgcgcgag
cgcttcgacgtcgacacccggcgcagcgcgttgtaccaggatctcaaggcgggcctggcg
ccggccggcgtggagtactacctgccgctgttcttcgatgagaccgcgacgctgttcgac
tacctgcagccgaacgcgctgccggtgatcgccaacggtgtgggcgaagcggcggcttcg
ttctgggcccagacccagaaccgctacgagcagcgacgtcacgacgtggagcgcccgctg
ctggcgccgagcgagctgtacctcagtccggaagcactcaacgcacacctgaacaccctg
ccccgcatcgaagtgtggggcgcggaccatgcgcgcatcgaggaggcttcgccgctcggc
gaccagccgctgccgccgttgccggtggccgcgcgcgacgcgccggcgggcgaggcgttg
aaatccttcatcggccactatccgggccgggtactgatcgcggccgactcgccgggccgt
cgcgaagcgctgctcgaggtcctgctggcagcggagttgaagccgccggtggtagctgac
ctgcccaccttcctggccgacgacagccagcgcttcgcgatcacggtggcgccgctggaa
gatggcttcgcgctcgacatgccgccactggcggtgctgaccgaacgccagctgttcccc
gagcgcgccggccagacccggcgcagccgtcgcgccgggcgcgagcccgaagcgatcatc
cgcgacctgggcgagttgaccgaaggcgcgccgatcgtccacgaagaccacggtgtcggc
cgctaccgcggcctgatcgtgctcgacgccggtggcatgccgggcgagttcctggaaatc
gaatacgccaagggcgaccggctgtacgtgcccgtggcccagctgcacctgatcagccgc
tactccggtgcatcgccggaaaccgcaccgctgcattcgctgggcggcgaacagtggagc
aaggccaagcgccgcgccgcagaaaaggtccgcgacgtcgccgccgagctgctggaaatt
caggcccgccgccgcgcgcgcgccgggctggcgctgcacgtggaccgggcgatgtacgaa
ccgttcgcggccggcttcccgttcgaggaaacccaggaccagatcgccgccattgaagcg
accctgcgcgacctggccagcagccagccgatggaccgcgtggtctgcggcgacgtcggc
ttcggcaagaccgaagtggccgtgcgcgccgccttcgcggcggccagtgccggcaagcag
gtggcggtgcttgtaccgaccacgctgctggccgaacagcattaccgcaacttccgcgac
cgcttcgccgactggccgctgcgggtggaagtgctctcgcgcttcaagaccgccaaggaa
atcaaggccgagctggagaaggtggccgccggtaccatcgatgtaatcatcggcacccat
cgcctgctgcagccggacgtgaagttcaaggacctgggcctggtggtggtggacgaagag
cagcgcttcggcgtgcgccagaaggaagcgctgaaggcgatgcgcgccaacgtgcacctg
ctgaccctgaccgccacgccgatcccgcgcacgctcaacatggccatggccgggctgcgc
gacctttcgatcatcgccaccccgccgccgaaccggctggcggtacagacgatcattact
gcgtgggacaacgcgctgctgcgcgaggcgttccagcgcgaactgtcgcgcggcggacag
ctgtatttcctgcacaacgacgtggaaagcatcggccgaatgcagcgcgacctggccgaa
ctggtccccgaagcgcgcatcggcatcgcccatgggcagatgcccgagcgcgagctggaa
cgggtgatgctggacttccagaagcagcgctacaacgtgctgctgtcgaccacgatcatc
gagtcgggcatcgacatccccaacgccaacactatcatcatcaaccgcgccgaccgcttc
ggcctggcccagctgcaccagctgcgcggccgtgtcggccgttcgcaccatcgcgcgtat
gcgtacctggtggtgccggacaagcgttcgatgacgccggatgcggaaaagcggctggaa
gccatttcctcgatggattcgctgggcgccggtttcacgttggctacccacgacctggag
atccggggtgcgggcgagctgctgggcgaagaccagagcgggcagatggccgaggtgggc
ttcagcctgtacaccgagctgctggagcgcgcggtacgcagcatccggctgggcaagctg
cccgacctggatgcgggcgaggaagtgcgcggtgccgaagtggagctgcatgtaccggcg
ttgatcccggacgattacctgcccgacgtgcacacccgcctgaccctgtacaagcggatc
agcagcgcgcgcgacagtggtgagctgcgtgagctgcaggtggagatgatcgaccgcttc
gggctattgccggacgcggccaagcatctgttcgcggtggcggagttgaaactgcagtgc
aacgcgctgggcatccgcaagctggagctgggcgagaacggcggccgcatcgtgttcgag
gcgcagccgcgcatcgacccgatggcggtgatccagatgatccagaagcagcccaagctg
tacacgatggacggcccggacaagctgcgcatcaaggtgccgctgccgttgccggaagac
cgtttcaatgcggccaaggcattgttgactacgttgacgccgggctga
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