Stenotrophomonas aracearum: PDM28_06235
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Entry
PDM28_06235 CDS
T10111
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sarc Stenotrophomonas aracearum
Pathway
sarc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sarc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PDM28_06235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sarc03019
]
PDM28_06235
03009 Ribosome biogenesis [BR:
sarc03009
]
PDM28_06235
Enzymes [BR:
sarc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PDM28_06235
Messenger RNA biogenesis [BR:
sarc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PDM28_06235
Ribosome biogenesis [BR:
sarc03009
]
Prokaryotic type
rRNA helicases
PDM28_06235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
AAA_30
CMS1
adh_short
Cas3-like_C_2
UvrA_inter
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
WNH49903
UniProt:
A0ABY9YGB4
LinkDB
All DBs
Position
1343695..1345626
Genome browser
AA seq
643 aa
AA seq
DB search
MSQESPAPLLFADLGLSDAVMQAVAAVGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKT
AAFALPVLSNLDFNQTKPQVLVLAPTRELAIQVAEAFQTYSSKIPGFRVLPVYGGQPYGQ
QLQALRRGVHVIVGTPGRVIDHLDRGTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKL
PESRQVALFSATMPPQIRRIAQTYLQNPAEVTIAAKTTTSANIRQRYWWVSGMHKLDALT
RILEVEPFDAMIIFARTKAATEELAEKLQARGLAAAAINGDMQQAQRERTIAQLKEGKLD
ILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRTGDAILFATPREKGML
RAIERATRQPIEEMQLPSVDAVNDTRISKFMSRISDALDAGGTEFYRDLLQRLEGEKNVP
AIEIAAALAKLLQGDAPFLLTPPVRGAREERAPRSNDRNDRGERPARFEPRFERGPRRED
DRGPRPERDFGNNDGGFERAPRRDIAPRGPAEQGMETFRIEVGHVHGVKPGNIVGAIANE
AGLESRFIGRIDIHDDFSILDLPAEMPGDLLTHLKKVWVSGQQLQMRKVEPGEDLTPSAR
PPFKPKFGRGGKPGGPGGHRGGPGGNDRPPRRDGFKPRGPRNG
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaagaatcccccgcgccgctgctgttcgcagacctcggcctgtccgacgctgtg
atgcaggccgtggccgccgtcggctatgaaaccccctcgccgatccaggccgccaccatt
ccagccatgctggaagggcgcgacgtgctcggccaggcccagaccggtaccggcaagacc
gccgccttcgcgctgccggtgctgtccaacctcgatttcaaccagaccaagccgcaggtg
ctggtgctggcgccgacccgtgaactcgccatccaggtcgccgaggcgttccagacctat
tcctcgaagatccccggcttccgcgtgctgccggtgtacggcggccagccctacggccag
cagctgcaggccctgcgccgtggcgtgcacgtcatcgtcggcaccccgggccgggtcatc
gaccacctggaccgcggcaccctggacctgtccgagctgaagacgctggtgctggacgaa
gccgacgaaatgctgcgcatgggcttcatcgacgacgttgaagccgtgctcaagaagctg
ccggaaagccgccaggtcgcgctgttctcggcgaccatgccgccgcagatccgccgcatc
gcgcagacctacctgcagaacccggccgaagtcaccatcgcggccaagaccaccacctcg
gccaacatccgccagcgttactggtgggtgagtggcatgcacaagctggacgcgctgacc
cgcatcctggaagtggagccgttcgacgcgatgatcatcttcgcgcggaccaaggccgcc
accgaagaactggccgaaaagctgcaggcccgtggcctggccgccgccgccatcaatggc
gacatgcagcaggcgcagcgcgagcgcaccatcgcccagctcaaggaaggcaagctggac
atcctggtcgccaccgacgtggccgcgcgcggcctggacgtggagcgcatcagccacgtg
ctgaactacgacattccgtacgacaccgaaagctacgtgcaccgcatcggccgtaccggt
cgtgccggccgcaccggtgacgcaatcctgttcgccaccccgcgcgagaagggcatgctg
cgtgcgatcgagcgcgccacccgccagccgatcgaagagatgcagctgccgagcgtggat
gcagtcaacgacacccgcatcagcaagttcatgagccgcatcagcgacgcactcgatgcc
ggcggtaccgagttctaccgcgacctgctgcagcgcctggaaggcgagaagaacgtgccg
gctatcgagattgccgccgcgctggccaagctgctgcagggcgatgctccgttcctgctg
accccgccggtgcgtggcgcgcgcgaagagcgtgccccgcgcagcaacgaccgcaacgac
cgtggcgagcgcccggcccgtttcgaaccgcgcttcgagcgtggtccgcgtcgtgaagac
gaccgcggcccgcgcccggaacgcgatttcggcaacaacgatggtggcttcgaacgcgcg
ccgcgccgtgacatcgccccgcgtggtccggccgaacagggcatggaaaccttccgcatc
gaagtgggccacgtgcatggcgtcaagccgggcaacatcgtcggcgcgatcgccaacgaa
gccgggctggaaagccgcttcatcggccgcatcgacatccatgacgacttctcgatcctg
gacctgccggccgaaatgccgggcgacctgctcacccacctgaagaaggtgtgggtctcg
ggccagcagcttcagatgcgcaaggtcgagccgggcgaagacctgaccccgtcggcgcgc
ccgccgttcaagccgaagttcggccgcggcggcaagccgggcggcccgggtggccaccgt
ggcggtccgggcggcaacgaccgcccgccgcgccgcgacggcttcaagccgcgcggtccg
cgcaacggctga
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