Stenotrophomonas aracearum: PDM28_06350
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Entry
PDM28_06350 CDS
T10111
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sarc Stenotrophomonas aracearum
Pathway
sarc03030
DNA replication
sarc03430
Mismatch repair
sarc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sarc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PDM28_06350 (dnaE)
03430 Mismatch repair
PDM28_06350 (dnaE)
03440 Homologous recombination
PDM28_06350 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sarc03032
]
PDM28_06350 (dnaE)
03400 DNA repair and recombination proteins [BR:
sarc03400
]
PDM28_06350 (dnaE)
Enzymes [BR:
sarc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PDM28_06350 (dnaE)
DNA replication proteins [BR:
sarc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PDM28_06350 (dnaE)
DNA repair and recombination proteins [BR:
sarc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PDM28_06350 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
WNH49924
UniProt:
A0ABY9YGD6
LinkDB
All DBs
Position
complement(1370953..1374534)
Genome browser
AA seq
1193 aa
AA seq
DB search
MTTSRFVHLHVHTEFSLADSTIRVPAKPDQADPKKAKQANLLSRAVELNLPALAVTDLNN
LFALVKFYKAAETVGIKPIAGADIMIAEEGMTPWRMTLLCRDREGYLSLSRLLTRAWMEG
HRPEGGVAVHPDWLKAGCHNLFALAGRDSLAGRLAGDGRHDLAEQQLADWQRVFGDGLHL
ELTRTGRDGEEAFNQFALMAAGQRGLPVVATNDVRFLRPDDFSAHEARVCISSGRVLDDP
KRPRDYSEQQYLKSPEEMCALFADIPDAIDNTLALAQRCNMEMRLGTYFLPDYPVPDNET
LDSWICSESRKGLEARLEKNPLAAGKTREDYFERLEFELATIIKMGFPGYFLIVADFIQW
GKNQGIPIGPGRGSGAGSLVAWALQITDLDPIPYNLLFERFLNPERVSMPDFDIDFCMDR
RDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDSGRVLGFPYGLVDGVSKLIPNILGIS
LKDAMGEGKDSEMASPELIQRYQNEDDVRDLIDLARQLEDLTRNAGKHAGGVVIAPEPLA
EFCPLFAEHDEGGRGRNPVTQFDKNDVEEIGLVKFDFLGLRTLTIIDWAVKAINKRHARA
GIPPVDITAIPLDDAPTYKDIFANGNTGAVFQFESSGMRRLLKDARPDRFEDLIALVSLY
RPGPMDLIPSFNARKHGQEEIIYPDPRTEAILKDTYGIMVYQEQVMQMAQIVGDYSLGGA
DLLRRAMGKKVPAEMAKHREIFREGAAKGGVEGPKADEIFDLMEKFAGYGFNKSHAAAYA
LVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLAEVRNLGLTVLPPRVNESAYMFEA
SSADTIQYGLGAIKGVGQGACEAVVDERVAKGRYESLLDFCMRIESGKLNRRTLEAMINC
GALDGLGKNRASLMLQLPEVLKATDQMSREKASGQNSLFGAPDPVSTALQLDLPEAKEWA
LGQLLDGERETLGFYLSGHPFDPHADDVKELVGTDLGMLDKLIPPARPGKDGEKRAWRQE
TPVILAGLVVGVRRKGESQIFMQLEDGKGRVECSAFTDGLAEFGHLMTKDRILVVKGGLR
EDEFNGGYALRIRQCWDFEEICANYATRLSLRLDLRQGEPVWSRVNALLDRHRPGRTPLR
LDLLLGSEQGPVAGMLDVAGDVAVRVDSQLVDALRADPAVRTLKVRYSPPWAN
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atgaccacttcccgtttcgtacatctccacgtccacaccgaattttcgctggcggattcg
accatccgtgtcccggcgaaaccggatcaggctgacccgaaaaaggccaagcaggccaac
ctgctcagccgcgcggtcgaactgaacctgccggccctggccgtgaccgacctgaacaac
ctgttcgcgctggtcaagttctacaaggccgccgaaaccgtgggcatcaagcccatcgcc
ggcgccgacatcatgatcgccgaagagggcatgacgccctggcgcatgaccctgctctgc
cgcgaccgcgaaggctacctcagcctctcgcgcctgctgacccgcgcctggatggaaggc
caccgccccgaaggcggcgtcgccgtgcatccggactggctgaaggccggttgccacaac
ctgtttgccctggccggccgcgacagcctggccggtcgcctggccggcgacggtcgccac
gacctggccgaacagcagctggccgactggcagcgcgtgttcggcgacggcctgcacctg
gaactgacccgcacagggcgcgacggtgaagaagccttcaaccagttcgcgctgatggcc
gccggccagcgcggcctgccggtggtcgcgaccaatgacgtgcggttcctgcgtccggac
gacttcagcgcccacgaagcgcgcgtctgcatttcctccggccgcgtgctggacgatccc
aagcgcccgcgcgactacagcgaacagcaatacctgaagtcgcccgaggaaatgtgcgcg
ctgtttgccgacattcccgacgcgatcgacaacacgctggcgctggcgcagcgctgcaac
atggaaatgcggctgggcacctacttcctgcccgactacccggtgcccgacaacgaaacg
ctggacagctggatctgcagcgaatcgcgcaagggcctggaagcgcgcctggaaaagaac
ccgctggccgccggcaagacccgcgaagactacttcgagcggctcgagttcgaactcgcc
accatcatcaagatgggcttccccggctacttcctgatcgtggccgacttcatccagtgg
ggcaagaaccagggcattccgatcggtcccgggcgtggttccggtgccggctcgctggtg
gcctgggcgctgcagatcaccgacctcgacccgattccgtacaacctgctgttcgagcgg
ttcctcaaccccgaacgcgtgtcgatgcccgacttcgacatcgacttctgcatggaccgc
cgcgacgaggtcatcgactacgtggcgcgcaagtatgggcgcgagcgggtcagccagatc
atcacctacggcaccatggcggccaaggccgtggtgcgcgactccgggcgcgtgctcggg
ttcccgtatggcctggtcgacggcgtttccaagctgatccccaacatcctgggcatctcg
ctcaaggacgccatgggcgaaggcaaggattcggaaatggcgtcgccggagctgatccag
cgctaccagaacgaagacgacgtgcgcgacctgatcgacctggcgcgccagctcgaagac
ctcacccgcaacgccggcaagcacgccggtggcgtggtgatcgcgcccgagccgctggcc
gagttctgcccactgttcgccgaacacgacgaaggcggccgcggtcgcaacccggtcacc
cagttcgacaagaacgacgtcgaagaaatcggcctggtgaagttcgacttcctgggcctg
cgcacgctcacgatcatcgactgggcggtcaaggcgatcaacaagcggcatgcgcgcgcc
ggcatcccgccggtggacatcaccgccattccactcgacgacgcgccgacctacaaggac
atcttcgccaacggcaataccggcgcggtgttccagttcgaatcctcgggcatgcgccgc
ctgctgaaggacgcgcgccccgaccgcttcgaagacctgatcgcgctggtgtcgctgtac
cgccccggcccgatggacctgattccctccttcaacgcgcgtaagcacggccaggaagaa
atcatctaccccgacccgcgcaccgaagcgatcctgaaggacacctacggcatcatggtg
taccaggagcaggtgatgcagatggcgcagatcgtgggcgattactcgctcggcggcgcc
gacctgctgcgccgcgcgatgggcaagaaggtgccggcggaaatggccaagcaccgcgag
atcttccgcgagggtgcggccaagggcggcgtggaaggcccgaaggccgacgaaatcttc
gacctgatggagaagttcgccggctacggcttcaacaagtcgcacgccgccgcctatgcg
ctggtcagttaccagaccgcctggctgaaacggcattacccggccgaattcatggcggcc
acgctgtcctcggacatggacaacaccgacaaggtggtcggcttcctggccgaggtccgc
aacctcggcctgaccgtgctgccgccgcgcgtgaacgagtcggcgtacatgttcgaagcc
tccagcgccgacaccatccaatacggcctcggcgcgatcaagggcgtcggccagggcgcg
tgcgaagccgtggtcgacgagcgcgtcgccaagggccgttacgaatcgctgctcgatttc
tgcatgcgcatcgaatcgggcaagctcaaccggcgcaccctggaagcgatgatcaactgc
ggtgcgctcgacggcctcggcaagaaccgcgcctcgctgatgctgcagctgcccgaagtg
ctcaaggccaccgaccagatgtcgcgcgagaaggcctccggccagaactcgctgttcggc
gcgcccgacccggtcagcaccgcgctgcagcttgacctgcccgaagcaaaggagtgggcg
ctgggccagctgctggacggcgagcgcgaaaccttgggcttctacctcagcggccatccg
ttcgacccgcatgccgacgacgtcaaggaactggtcggcaccgacctgggcatgctggac
aagctgattccgccggcccgacccggcaaggacggcgagaagcgcgcctggcgccaggaa
accccggtgatcctggccggcctggtggtcggcgtgcgccgcaagggcgaaagccagatc
ttcatgcagctcgaggacggcaagggccgggtcgagtgcagcgccttcaccgacggcctg
gccgagttcggccacctgatgaccaaggaccgcatcctggtggtcaagggcggcctgcgc
gaggacgagttcaacggcggctacgcgctgcgcatccgccagtgctgggacttcgaggaa
atctgcgccaactacgccacgcgcctgtcgctgcgcctggacctgcgccagggcgagccg
gtctggagccgggtcaatgccctgctcgaccgccaccgccccggccgcacgcccctgcgc
ctggacctgctgctcggctccgaacagggcccggtggccggcatgctggacgtggccggc
gacgtcgccgtgcgcgtggacagccagctggtggacgccctgcgggccgacccggcggtg
cgcacactgaaggtgcgttacagtccgccgtgggccaactag
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