Stenotrophomonas aracearum: PDM28_07430
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Entry
PDM28_07430 CDS
T10111
Symbol
pcnB
Name
(GenBank) polynucleotide adenylyltransferase PcnB
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
sarc Stenotrophomonas aracearum
Pathway
sarc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sarc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PDM28_07430 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sarc03019
]
PDM28_07430 (pcnB)
Enzymes [BR:
sarc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
PDM28_07430 (pcnB)
Messenger RNA biogenesis [BR:
sarc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PDM28_07430 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol
PolyA_pol_arg_C
PolyA_pol_RNAbd
DUF3136
DUF7064
Motif
Other DBs
NCBI-ProteinID:
WNH50109
LinkDB
All DBs
Position
1590310..1591680
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AA seq
456 aa
AA seq
DB search
MGNPETSTGSANINSSATSPFSLRVIPRDQHNISRKDISPNALRVLYRLRDSGFGAYLVG
GAVRDLLVGGSPKDFDVATDATPEQVKALFRNCRLIGRRFRLAHVVFGREIIEVATFRAN
SDDGSGDREMENGMLVRDNVYGSIEDDAVRRDFTCNALYYAIEDFSVRDYTGGFEDVQAR
LMKLIGDPEQRYREDPVRMLRAVRLAAKLGFQIEDATAEPLPRLASLLGEAAPARLFEEV
LKLFLSGHGVASFEGLERYGLLDVMFPESAAALRSNRSGALRRMVIEGLRNTDLRVANDE
PVSPSFLFALLLWPAFCRALATLQKQGVALEEAQRRAADRVTLHQLTTIALPRRFSLPMQ
EIWLLQGRFSSRQRKRVIRTLTHPRFRAAFDFLALRQVASSEHAADVEFWREAQLQSGPE
LDSTLDAAHAEAELDENGAPRKRRRRRRRPGGAAGE
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
ttgggcaatcccgaaacttcaaccggaagcgccaacatcaattcctccgctacatcaccg
ttcagtctgcgcgtgatcccccgcgaccagcacaacatctcccgcaaggacatcagcccg
aacgccctgcgcgtgctttaccggctgcgcgactcgggcttcggcgcctacctggtgggc
ggcgccgtgcgcgacctgctggtcggcggcagccccaaggatttcgacgtggccaccgac
gccacgccggagcaggtcaaggcgctgttccgcaactgccgcctgatcgggcgccgcttc
cgcctggcgcacgtggtgttcggccgcgaaatcatcgaagtggccaccttccgcgccaac
agcgatgacggcagcggcgaccgcgagatggaaaacggcatgctggtgcgcgacaacgtg
tacggcagcatcgaagacgacgcggtgcgccgcgacttcacctgcaacgcgctgtactac
gccatcgaagatttctcggtgcgcgactacaccggcggcttcgaagacgtgcaggcgcgc
ctgatgaagctgatcggcgaccccgaacagcgctaccgcgaagacccggtgcgcatgctg
cgcgcggtgcgcctggcggccaagcttggtttccagatcgaagacgccaccgccgaaccg
ctgccgcgcctggccagcctgctcggcgaagccgcgccggcgcgcctgttcgaggaagtg
ctcaagctgttcctgtccgggcatggcgtggccagcttcgaaggcctggaacggtacggc
ctgctcgacgtgatgttccccgaaagcgccgccgcgctgcgcagcaaccgcagtggcgcg
ctgcgccgcatggtgatcgaaggcctgcgcaacaccgacctgcgcgtggccaacgacgag
ccggtgtcgccctcgttcctgttcgcgctgctgctgtggccggcgttctgccgcgccctg
gcgaccctgcagaagcagggcgtggcgctcgaagaagcgcagcgtcgcgctgctgaccgg
gtcaccctgcaccagctgaccaccatcgcgctgccgcgccggttctcgctgccgatgcag
gaaatctggctgctgcagggccgtttcagctcgcgccagcgcaagcgcgtgatccgcacc
ctgacccatccgcgcttccgtgccgcgttcgacttcctggccctgcgccaggtcgcctcc
agcgagcacgcagccgacgtggagttctggcgcgaagcgcagctgcagtccgggcccgaa
ctggactcgaccctcgacgcggcgcatgccgaagccgaactggacgagaacggcgcaccg
cgcaagcgtcgtcgccgccgccgtcgtcccggtggggccgcaggcgagtaa
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