Stenotrophomonas aracearum: PDM28_08510
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Entry
PDM28_08510 CDS
T10111
Name
(GenBank) long-chain fatty acid--CoA ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
sarc Stenotrophomonas aracearum
Pathway
sarc00061
Fatty acid biosynthesis
sarc00071
Fatty acid degradation
sarc01100
Metabolic pathways
sarc01212
Fatty acid metabolism
sarc02024
Quorum sensing
sarc04146
Peroxisome
Module
sarc_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
sarc00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
PDM28_08510
00071 Fatty acid degradation
PDM28_08510
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
PDM28_08510
09145 Cellular community - prokaryotes
02024 Quorum sensing
PDM28_08510
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
sarc01004
]
PDM28_08510
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sarc04147
]
PDM28_08510
Enzymes [BR:
sarc01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
PDM28_08510
Lipid biosynthesis proteins [BR:
sarc01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
PDM28_08510
Exosome [BR:
sarc04147
]
Exosomal proteins
Exosomal proteins of breast milk
PDM28_08510
Exosomal proteins of breast cancer cells
PDM28_08510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
AMP-binding_C_2
Motif
Other DBs
NCBI-ProteinID:
WNH50314
LinkDB
All DBs
Position
complement(1839270..1840946)
Genome browser
AA seq
558 aa
AA seq
DB search
MSLERPWLKSYPNGVPAEIDVNEFHSVSAVFDTSVARFRDRPAYSSFGKVLTYGETDALV
EKFAAYLLGELKLKKGDRVALMMPNCLQYPVATFGVLRAGLTVVNVNPLYTARELKHQLV
DSGASVLVVVDNFGDTVQQVIAETQVKQVITTGLGDMLGAKGVLVNFVLKYIKKMVPNYS
LRGAIRFNQALKLGSKHTLPKVELDHDDVAFLQYTGGTTGVAKGAMLTNRNLVANMQQAS
AWISASGIEMGKEWIITALPLYHIFALTANGLVFMKFGGCNHLITNPRDMKGFVKELKST
RFTAITGVNTLFNGLLNTPGFDEIDFSSLKVTLGGGMAVQRSVAERWKKTTGVTLVEAYG
LTETSPAACINPLNLAEYNGAIGLPIPSTDACVKDDNGVTMAAGDVGELCIRGPQVMKGY
WQRPEDTAKAIDADGWLHTGDMARMDENGFFYIVDRKKDMILVSGFNVYPNEVEDVIAMM
PGVLEVAAVGVPDEKSGEIVKVVIVKKDPNLTAEMVKEHARANLTGYKHPKIVEFRKELP
KTNVGKILRRELRDAPAA
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgagtctggaacgtccctggctgaagagctatcccaacggcgtacccgccgaaatcgac
gtcaatgagttccattcggtgtcggccgttttcgatacgtccgtggccaggttccgcgac
cgtcccgcctactccagcttcggcaaggtcctcacctatggtgaaaccgacgccctggtc
gaaaaattcgccgcctacctgctgggcgagctgaagctcaagaagggcgaccgcgtcgcc
ctgatgatgcccaactgcctgcagtacccggtcgccaccttcggcgtgctgcgcgccggc
ctgaccgtggtcaacgtcaacccgctgtacaccgcgcgcgaactgaagcaccagctggtc
gattccggtgcttccgtactcgtggtcgtggacaacttcggcgacaccgtgcagcaggtc
atcgccgagacccaggtcaagcaggtcatcaccaccggcctgggcgacatgctcggcgcg
aagggcgtgctggtgaacttcgtgctgaagtacatcaagaagatggtgcccaactacagc
ctgcgcggcgcgatccgcttcaaccaggcgctgaagctgggcagcaagcacaccctgccg
aaggtggagctggaccacgacgacgtggccttcctgcagtacaccggcggcaccaccggc
gtggccaagggcgccatgctgaccaaccgcaacctggtggccaacatgcagcaggcctcg
gcgtggatctccgcgtcgggcattgaaatgggcaaggagtggatcatcaccgccctgccg
ctgtaccacatcttcgcattgaccgcgaacgggctggtcttcatgaagttcggtggctgc
aaccacctgatcaccaacccgcgcgacatgaagggcttcgtcaaggagctcaagtcgacc
cgcttcaccgccatcaccggcgtcaacacgctgttcaacggcctgctcaacacccccggc
ttcgacgagatcgacttctcctcgctgaaggtcaccctgggcggcggcatggccgtgcag
cgttcggtcgcagagcgctggaagaagaccaccggcgtcaccctggtcgaagcctacggc
ctgaccgaaacctcgccggccgcctgcatcaacccgctcaacctggccgagtacaacggc
gcgatcggcctgccgattccgtccaccgacgcctgcgtgaaagacgacaacggcgtcacc
atggctgccggcgacgtcggcgaactgtgcatccgtggcccgcaggtgatgaagggttac
tggcagcgtccggaagacaccgccaaggcgatcgacgccgacggctggctgcacaccggc
gacatggcgcgcatggacgagaacggcttcttctacatcgtcgaccgcaagaaggacatg
atcctggtgtccggcttcaacgtgtacccgaacgaggtcgaagacgtgatcgcgatgatg
cccggcgtgctggaagtggctgcagtgggcgtgcccgacgaaaagtccggcgaaatcgtc
aaggtcgtgatcgtcaagaaggacccgaacctgaccgccgaaatggtcaaggaacacgcc
cgcgccaacctgaccggctacaagcacccgaagatcgtcgagttccgcaaggaactgccg
aagaccaacgtcggcaagatcctgcgccgcgagctgcgcgacgccccggcggcgtaa
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