Stenotrophomonas aracearum: PDM28_08740
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Entry
PDM28_08740 CDS
T10111
Name
(GenBank) sigma-54 dependent transcriptional regulator
KO
K10941
sigma-54 dependent transcriptional regulator, flagellar regulatory protein
Organism
sarc Stenotrophomonas aracearum
Pathway
sarc02020
Two-component system
sarc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sarc00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PDM28_08740
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PDM28_08740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sarc03000
]
PDM28_08740
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
sarc02035
]
PDM28_08740
Transcription factors [BR:
sarc03000
]
Prokaryotic type
Helix-turn-helix
Other families
PDM28_08740
Bacterial motility proteins [BR:
sarc02035
]
Flagellar system
Flagellar assembly proteins
Others
PDM28_08740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
FleQ
HTH_8
AAA_5
HTH_50
AAA_16
AAA_19
AAA
bpMoxR
UPF0175
MCM
AAA_7
Motif
Other DBs
NCBI-ProteinID:
WNH50357
LinkDB
All DBs
Position
complement(1892559..1894046)
Genome browser
AA seq
495 aa
AA seq
DB search
MSESRILVLDNDAVRAERTVSLLEFMDFNPRWVADPADFDHRRHRATDWMAVIIGGLEPG
ERSEALFAWAGQGALPPPVMLIDGDASAFAQRHGLHEANVWPLEAPLRHAQMEALLRRAS
LKRLDAEHQAGAVEEQGPTGDGAAVSALRQMIEQVAAFDTTVLVLGESGTGKEVVSRSIH
QRSPRRDGPFVAINCGAIPADLLESELFGHEKGAFTGALSARKGRFEMAEGGTLLLDEIG
DMSLPMQVKLLRVLQERSFERVGGNQTIRCNVRVIAATHRDLESRIADGKFREDLFYRLN
VFPIEVPALRERSEDLPALVTTIAGQLARTGRGEVRFSPEALQALACYEWPGNVRELTNL
VERLAVLHPGGSVRVQDLPAKYRGDFAVAAPVAVAAPEANGDERLDLRSFSFHTPTTGTA
AAAANPAERAPALPDAGLDLRNHMASIELTLINEALERTQGVVAHAAQLLGLRRTTLVEK
LRKYGIERDQAELAG
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagtcgcgcatcctggtgctggacaacgacgccgtgcgcgccgagcgcaccgtc
agcctgctggaattcatggacttcaatccgcgctgggtcgccgacccggccgacttcgac
caccgccgccaccgcgccaccgactggatggcggtgatcatcggcgggctggaaccgggc
gagcgcagcgaagcgctgtttgcctgggccggccagggcgccctgccgccgccggtgatg
ctgatcgacggcgacgccagcgccttcgcgcagcgccatggcctgcatgaagccaacgtg
tggccgctggaagcgccgctgcgccatgcgcagatggaagcgctgctgcgccgcgccagc
ctgaagcggctggacgccgaacaccaggccggtgccgtggaggaacagggcccgaccggc
gacggtgcggcggtaagcgcgctgcgccagatgatcgagcaggtcgccgcgttcgacacc
accgtgctggtgctgggcgaatcgggcaccggcaaggaagtggtgtcgcgctcgatccac
cagcgctcgccgcgccgcgacggtccgttcgtcgcgatcaactgcggtgcgattccggcc
gacctgctggaaagcgagctgttcggtcatgaaaagggcgccttcaccggtgcgctgagt
gcgcgcaagggccgtttcgaaatggccgaaggcggcaccctgctgctcgatgaaatcggc
gacatgagcctgccgatgcaggtcaaactgctgcgcgtcctgcaggagcgcagcttcgag
cgcgtcggcggcaaccagaccatccgctgcaacgtgcgcgtgatcgccgcaacacatcgc
gacctggaatcgcgcattgccgacggcaagttccgcgaggatctgttctaccgcctcaac
gtgttcccgatcgaagtgccggccctgcgcgagcgcagcgaagatctgcccgcgctggtc
accaccattgcaggccaactggcccgcaccggtcgtggcgaagtgcgtttcagcccggaa
gcgctgcaggcgcttgcctgttacgaatggccgggcaacgtgcgcgagctgaccaacctg
gtggagcgcctggcggtgctgcatccgggcggcagcgtgcgcgtgcaggacctgccggcc
aagtaccgcggcgatttcgcagtggccgcaccggtggcggttgctgcgccggaagccaac
ggcgacgagcgcctggacctgcgtagtttctcgttccacaccccgacgacgggcaccgca
gccgcagcggcaaacccggcagaacgcgcccccgccctgcccgacgcaggcctggacctg
cgcaaccacatggccagcatcgaattgacgctgatcaacgaagcgctggagcgcacgcag
ggcgtggtcgcgcacgccgcgcagctgctcggcctgcggcgcaccacgctggtggaaaaa
ttgcgcaagtacggaatcgaacgcgaccaggcggagctggccggctaa
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