Stenotrophomonas aracearum: PDM28_11950
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Entry
PDM28_11950 CDS
T10111
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
sarc Stenotrophomonas aracearum
Pathway
sarc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sarc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
PDM28_11950 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sarc03400
]
PDM28_11950 (sbcB)
Enzymes [BR:
sarc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
PDM28_11950 (sbcB)
DNA repair and recombination proteins [BR:
sarc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
PDM28_11950 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PDM28_11950 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PDM28_11950 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
WNH47414
LinkDB
All DBs
Position
2620818..2622257
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AA seq
479 aa
AA seq
DB search
MADSFLFYDLETFGQDPRRTRIAQFAAIRTDADLNPIDEPVSFYVKPADDLLPSPVATLI
TGITPQHAMAEGVSEAEAFARINDLMARPGTCTLGYNTLRFDDEFVRHGLFRNFFDPYER
EWRNGNSRWDLLDMLRLVHALRPDGIAWPQREDGATSFKLEHLALANDVRVGDAHEALSD
VHATIGMARLFKQAQPRLWDYALKLRDKRFVGSLLEVDALQPVLHISMRYPAQRMCAAPV
LPIARHPYINNRVIALDLEGDLDGLLALPAETLAARLYTRAADLAEGEQRVPLKEVHLNK
VPALVAWNHLRPADHARLGIDVALVEANVARVRAAGPALVEKVRQVYAGERTATVSDVDA
SLYDGFLADGDKALMTRLRTSPPAELGGFAERLKDPRMPELLFRYRARNHPQTLDAAERD
RWNDYRRQRLSGDAALGEQSLAEFRAQLDTLAAEHADAPDKLALLQHLRDWGNDLEQSL
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atggccgacagcttcctgttctacgacctggaaaccttcggccaggacccgcgtcgcacc
cgcatcgcgcagttcgcggcgatccgcaccgacgccgacctgaacccgatcgacgaaccg
gtcagcttctacgtgaagccggccgacgacctgctgccgtcgccggtggcgacgctgatc
accggcatcaccccgcagcatgcgatggccgaaggggtcagcgaggccgaagcgttcgcg
cgcatcaacgatctgatggcgcggccgggcacctgcacgctgggctacaacacgctgcgc
ttcgatgacgaattcgtccgccacgggctgttccgcaacttcttcgacccgtacgaacgc
gagtggcgcaacggcaattcgcgctgggacctgctggacatgctgcgcctggtgcatgcg
ttgcgcccggacggcattgcctggccgcagcgcgaagacggcgccacctcgttcaagctc
gaacacctggcattggccaacgacgtgcgcgtcggcgatgcgcatgaggcgctgtcggac
gtgcacgccaccatcggcatggcgcgcctgttcaagcaggcccagccgcggctgtgggac
tacgcgctgaagctgcgcgacaagcgcttcgtcggcagcctgctcgaggtggacgccctg
cagcccgtgctgcacatctcgatgcgctacccggcccagcgcatgtgcgccgccccggtg
ctgccgatcgcgcggcatccctacatcaacaaccgggtgatcgcgctggacctggaaggc
gacctcgacgggctgctggcgctgccggccgagaccctggccgcgcgcctgtacacccgc
gcggccgacctcgccgaaggcgaacagcgcgtgccgctgaaggaagtgcacctcaacaag
gtgccggcgctggtcgcctggaaccacctgcgcccggccgatcacgcccggttggggatc
gatgtggcgctcgtggaagccaatgtcgcgcgcgtgcgcgcggccggcccggcgctggtc
gagaaggtacgccaggtgtatgccggcgagcgcaccgccacggtcagcgacgtggatgcc
tcgctgtacgacggcttcctggccgacggcgacaaggccctgatgacccgcctgcgcacc
agcccaccggccgagctgggcgggttcgccgagcggctgaaagacccgcgcatgccggaa
ctgctgttccgctaccgcgcgcgcaaccatccgcagaccctggatgcggccgaacgcgat
cgctggaacgactaccgccggcagcgcctgtctggcgatgcggcgctgggcgagcagagc
ctggcggagttccgcgcgcagctggacaccttggccgccgagcacgccgacgcgcccgac
aaactggccctgttgcagcacctgcgcgactggggcaacgacctggagcagagcctgtga
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