Stenotrophomonas aracearum: PDM28_13305
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Entry
PDM28_13305 CDS
T10111
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
sarc Stenotrophomonas aracearum
Brite
KEGG Orthology (KO) [BR:
sarc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sarc03009
]
PDM28_13305 (rimO)
Enzymes [BR:
sarc01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
PDM28_13305 (rimO)
Ribosome biogenesis [BR:
sarc03009
]
Prokaryotic type
ribosomal protein modification factors
PDM28_13305 (rimO)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TRAM_2
CLP1_P
YajR_YAM
TRAM
Motif
Other DBs
NCBI-ProteinID:
WNH47655
LinkDB
All DBs
Position
complement(2908580..2909947)
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AA seq
455 aa
AA seq
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MSQLNPKVGFVSLGCPKALVDSERILTQLRAEGYDIVPSYDSADVVVVNTCGFIDSAVTE
SLDAIGEAMNANGKVIVTGCLGKRPEEIRKAYPDVLAVSGPQDYTSVMEAVHAALPPKHD
PFVDLVPDYGIKLTPRHYAYLKISEGCNHHCSFCIIPSMRGKLVSRPVDEVLREAERLVR
GGVKELLVVSQDTSAYGVDVKYAERMWRDKAYQTRMKSLCEGLSELDAWTRMHYVYPYPH
VDDVVPLMAENRILPYLDIPFQHATPRILKLMKRPGAVDKTLERVQRWRQLCPDITVRST
FIVGFPGETEAEFEELLSFLDEAQLDRVGAFAYSPVTGATANDLPGAVPEEVKQERLARF
MARQAEISAARLEAKIGTVQQCLVDAIEDGIAVARSKADAPEIDGLVHIQNADEAKLRVG
QFVNVEITESDDHDLYGDALIEANAVGRQLDLKVL
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgtcccagctgaaccccaaagtcggcttcgtcagccttggctgcccgaaggcccttgtc
gattccgagcgcatcctcacccagctgcgggccgagggttacgacatcgttccctcctac
gattcggccgacgtggtggtggtcaacacctgtggcttcatcgattcggcggtgaccgag
tcgctggacgcgatcggcgaggcgatgaacgccaacggcaaggtgatcgtcaccggctgc
ctgggcaagcgcccggaagagatccgcaaggcctatccagacgtgctggcggtgtccggc
ccgcaggactacaccagcgtgatggaggcggtgcatgccgcgctgccgcccaagcacgac
ccgttcgtggacctggttccggactacggcatcaagctgaccccgcgtcactatgcctat
ctgaagatttccgaaggctgcaaccaccattgcagcttctgcatcattccctcgatgcgc
ggcaagctggtctcgcgcccggtggacgaggtgctgcgcgaagccgagcggctggtgcgc
ggcggggtcaaggagctgctggtggtctcgcaggacacctcggcctatggcgtggacgtg
aagtacgccgagcgcatgtggcgcgacaaggcctaccagacccgcatgaagtcgctgtgc
gaagggctgtccgaactggatgcctggacccgcatgcactacgtgtacccgtatccgcac
gtggacgacgtggtgccgctgatggccgagaaccggatcctgccctacctggacattccg
ttccagcacgccaccccgcgcatcctgaagctgatgaagcgcccgggcgcggtcgacaag
accctcgagcgcgtgcagcgctggcgccagctgtgcccggacatcaccgtgcgctcgacc
ttcatcgttggcttccccggcgaaaccgaggccgagttcgaagagctgctgtcgttcctg
gacgaggcgcagctggaccgcgtgggtgccttcgcctactcgccggtgacgggtgccacc
gccaacgacctgcccggcgcggtgccggaagaagtgaagcaggagcgcctggcgcgcttc
atggcccgccaggcggagatttccgccgcgcgactggaggcgaagatcggcacggtgcag
cagtgcctggtcgatgcgattgaagacggcatcgccgtggcccgctccaaggccgatgcg
ccggagatcgacggcctggtgcacatccagaacgccgacgaggcgaagctgcgagtgggc
cagttcgtgaatgtggagatcaccgagagcgacgaccacgacctttacggcgatgcgctg
atcgaggcgaacgccgtgggccgtcagctcgacctcaaggtgttgtga
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