KEGG   Stenotrophomonas aracearum: PDM28_16485
Entry
PDM28_16485       CDS       T10111                                 
Symbol
lpdA
Name
(GenBank) dihydrolipoyl dehydrogenase
  KO
K00382  dihydrolipoyl dehydrogenase [EC:1.8.1.4]
Organism
sarc  Stenotrophomonas aracearum
Pathway
sarc00010  Glycolysis / Gluconeogenesis
sarc00020  Citrate cycle (TCA cycle)
sarc00260  Glycine, serine and threonine metabolism
sarc00280  Valine, leucine and isoleucine degradation
sarc00310  Lysine degradation
sarc00380  Tryptophan metabolism
sarc00620  Pyruvate metabolism
sarc00630  Glyoxylate and dicarboxylate metabolism
sarc00640  Propanoate metabolism
sarc00670  One carbon pool by folate
sarc00785  Lipoic acid metabolism
sarc01100  Metabolic pathways
sarc01110  Biosynthesis of secondary metabolites
sarc01120  Microbial metabolism in diverse environments
sarc01200  Carbon metabolism
sarc01210  2-Oxocarboxylic acid metabolism
sarc01240  Biosynthesis of cofactors
Module
sarc_M00009  Citrate cycle (TCA cycle, Krebs cycle)
sarc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
sarc_M00036  Leucine degradation, leucine => acetoacetate + acetyl-CoA
sarc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA
sarc_M00621  Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:sarc00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00010 Glycolysis / Gluconeogenesis
    PDM28_16485 (lpdA)
   00020 Citrate cycle (TCA cycle)
    PDM28_16485 (lpdA)
   00620 Pyruvate metabolism
    PDM28_16485 (lpdA)
   00630 Glyoxylate and dicarboxylate metabolism
    PDM28_16485 (lpdA)
   00640 Propanoate metabolism
    PDM28_16485 (lpdA)
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    PDM28_16485 (lpdA)
   00280 Valine, leucine and isoleucine degradation
    PDM28_16485 (lpdA)
   00310 Lysine degradation
    PDM28_16485 (lpdA)
   00380 Tryptophan metabolism
    PDM28_16485 (lpdA)
  09108 Metabolism of cofactors and vitamins
   00785 Lipoic acid metabolism
    PDM28_16485 (lpdA)
   00670 One carbon pool by folate
    PDM28_16485 (lpdA)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:sarc04147]
    PDM28_16485 (lpdA)
Enzymes [BR:sarc01000]
 1. Oxidoreductases
  1.8  Acting on a sulfur group of donors
   1.8.1  With NAD+ or NADP+ as acceptor
    1.8.1.4  dihydrolipoyl dehydrogenase
     PDM28_16485 (lpdA)
Exosome [BR:sarc04147]
 Exosomal proteins
  Exosomal proteins of breast cancer cells
   PDM28_16485 (lpdA)
SSDB
Motif
Pfam: Pyr_redox_2 Pyr_redox_dim Pyr_redox Biotin_lipoyl Pyr_redox_3 GIDA FAD_oxidored Biotin_lipoyl_2 NAD_binding_8 DAO AlaDh_PNT_C Thi4 HI0933_like FAD_binding_3 FAD_binding_2 3HCDH_N GCV_H RnfC_N DUF478 SlpA_D2
Other DBs
NCBI-ProteinID: WNH48249
LinkDB
Position
complement(3655980..3657788)
AA seq 602 aa
MATIEIKVPDIGDYSAVPVIELLVAVGDTVKKDQGLVTLESDKATLEVPSSAAGVVKEIK
VKLGDTLSEGDVVVVLDAEGAAAAPAAPAAEAPKAAAPASKPPVTPSHRAPAEPAAPQPA
LSSGKPADIECQMVVLGAGPGGYTAAFRSADLGVDTVLIERYASLGGVCLNVGCIPSKAL
LHAAAVIDEVAHAGDFGVEFGAPTITLDKLRGYKEKVVTQLTKGLAGMAKQRKVRTVQGV
ATFVSANELEIVGDDGKTQLLRFQQCIIAAGSQAVKLPNFPWDDPRVMDSTDALELADVP
GSLLVVGGGIIGLEMATVYAALGSKVTVVEFMDQLMPGADKDLVKPLADRLKKQGIEVHL
KTKASGVSADAKGITVTFEAAAEGEKPGLEQGTFDRVLVAVGRSPNGKKIGAEKAGVGVT
DRGFIPVDRQMRTNVPHIFAIGDIVGNPMLAHKATHEGKLAAEVASGGKKEWVARVIPSV
AYTNPEIAWVGVTETEAKAQGLKVGVAKFPWAASGRAIGIGRTEGFTKLIFDEETHRIIG
GAIVGVHAGDLLAEIGLAIEMGAEAEDIGHTIHAHPTLSESVAMAAEIYDGTITDLYIPK
KK
NT seq 1809 nt   +upstreamnt  +downstreamnt
atggccactattgaaatcaaggttcccgacatcggcgattacagcgccgtcccggtgatc
gaactgctggtcgcggtgggcgacacggtgaagaaggaccagggcctggtcacgctggag
tcggacaaggccacgctggaagtgccgtcttcggccgccggcgtggtcaaggaaatcaag
gtcaagctcggcgacacgctgtccgaaggcgacgtggtggtggtgctggacgccgaaggc
gccgctgccgctcccgctgcgccggccgccgaggcgccgaaggccgccgcaccggccagc
aagccgccggtgaccccgtcgcaccgcgccccggccgaacccgccgcgccgcagccggca
ctgtcctcgggcaagccggccgacattgaatgccagatggtggtgctgggcgccggcccg
ggcggttacaccgctgcattccgctcggccgacctgggcgtggacaccgtgctgatcgag
cgttacgccagcctgggcggggtctgcctcaacgtgggctgcattccctccaaggcgctg
ctgcacgctgcggcggtgatcgacgaagtggcccacgccggcgacttcggggtggagttc
ggcgcgccgaccatcaccctggacaagctccgcggctacaaggaaaaggtggtcacccag
ctgaccaagggcctggccggcatggccaagcagcgcaaggtgcgcaccgtgcagggcgtg
gcgaccttcgtctcggccaacgagctggagatcgtcggcgacgacggcaagacccagctg
ctgcggttccagcagtgcatcatcgccgccggttcgcaggcggtgaagctgccgaacttc
ccgtgggacgacccgcgcgtgatggactccaccgacgcgctggagctggccgacgtgccg
ggttcgctgctggtcgtgggtggcggcatcatcgggctggaaatggcgaccgtgtatgcc
gcgctcggcagcaaggtcaccgtggtcgagttcatggaccagctgatgccgggcgccgac
aaggacctggtcaagccgctggcggaccgtctgaagaagcagggcatcgaggtccacctg
aagaccaaggcgtcgggcgtcagcgccgatgcgaagggcatcacggtgaccttcgaagcc
gccgccgaaggcgagaagccgggcctggagcagggcaccttcgaccgcgtgctggtcgcc
gtgggccgttcgcccaacggtaagaagatcggcgcggaaaaggccggcgtgggcgtgacc
gatcgcggtttcatcccggtcgaccgccagatgcgtaccaacgtgccgcacatctttgcc
atcggcgatatcgtcggcaacccgatgctggcccacaaggccacgcacgaaggcaagctg
gccgccgaagtggcctcgggcgggaagaaggagtgggtggcgcgggtgattccgtcggtg
gcctacaccaacccggaaatcgcctgggtcggcgtgaccgagaccgaagccaaggcgcag
ggcctgaaggtcggcgtggccaagttcccgtgggccgccagcggccgcgcgatcggcatc
ggccgcaccgaaggcttcaccaagctgatcttcgacgaggaaacccaccgcatcatcggc
ggcgcgatcgtcggcgtgcatgccggcgacctgctggccgagatcggcctggccatcgag
atgggtgccgaagccgaagacatcggccacaccatccacgcccacccgacgctcagcgag
tcggtggcgatggccgcggaaatctacgacggcaccatcaccgatctgtacatccccaag
aagaaataa

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