Stenotrophomonas aracearum: PDM28_17270
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Entry
PDM28_17270 CDS
T10111
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
sarc Stenotrophomonas aracearum
Pathway
sarc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sarc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PDM28_17270 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sarc03021
]
PDM28_17270 (rho)
03019 Messenger RNA biogenesis [BR:
sarc03019
]
PDM28_17270 (rho)
Transcription machinery [BR:
sarc03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
PDM28_17270 (rho)
Messenger RNA biogenesis [BR:
sarc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PDM28_17270 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA
OB_RNB
S1CSD-TOTE-2
Fungal_virus_P2_C
Spore_III_AA
Mor
AAA_22
ResIII
Motif
Other DBs
NCBI-ProteinID:
WNH48395
UniProt:
A0ABY9YD88
LinkDB
All DBs
Position
3830880..3832664
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AA seq
594 aa
AA seq
DB search
MSDITTSEPGSADAPAEKRVRKPRVAKAAAPSADTGSTPAQNALPLAAAPAAPAPAAPAP
VQAPPAPAASSGDAPAPQGGGQDAGDGGQRNNNNNNNNNQQGGQNPYQQGQNQGGQNQGQ
GQGNRRDRFRNRRDRDRNRGGGGGGYRDDGMPQDNGEQQPFVRTQQANVPEGFPVYSLSD
LKRMPAQKLLDIADQLQISEGVARARKQDVIFALLKVLTRHGDGVAADGVLEILPDGFGF
LRAAEASYLAGPDDTYISPSQIRRFNLRTGDHLSGRIRFPKDGERYFALSIVDTINGEPL
EASKNKVLFENLTPLFPRKRFTLERGNGSSEDITGRILDLMAPQGKGQRALIVSPPKAGK
TMMMQQVATAITTNHPEVHMIVLLIDERPEEVTEMQRTVRGEVISSTFDEPAARHVQVAE
MVIERAKRLVEHKKDVVILLDSITRLARAYNNVVPSSGKVLTGGVDANALHRPKRFFGAA
RNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNSEVHLNRRITEKRVYPAIDINRSG
TRREDLLIEPELLQKIWILRKLLHPMDEIAAMEFLLDKMKNTKSNDEFFGSMKR
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
ttgtccgatatcactacttccgaacccgggagcgccgacgcgcccgccgagaagcgcgtg
cgcaagccgcgcgtcgccaaggccgctgctcccagcgccgacaccgggtccacccccgcc
cagaacgccctgcccctggctgccgcgcccgccgcgccggcgccggctgctccggcacct
gtgcaggcacctccggcaccggccgcgtccagcggcgatgccccggccccgcaaggcggt
ggccaggacgccggcgacggcggccagcgcaacaacaacaacaacaacaacaacaaccag
cagggcgggcagaacccgtaccagcagggccagaaccagggcggccagaaccagggccaa
ggccagggcaaccgccgcgaccgcttccgcaatcgccgtgaccgcgaccgcaatcgcggc
ggcggcggcggtggctaccgcgacgacggcatgccgcaggacaatggcgagcagcagccg
ttcgtgcgtacccagcaggccaacgtgcccgaaggcttcccggtctactcgctgagcgac
ctcaagcgcatgccggcgcagaagctgctggacattgccgaccagctgcagatttccgag
ggcgtggcccgtgcccgcaagcaggacgtcatcttcgccctgctcaaggtgctcacccgc
catggcgacggcgttgccgccgacggcgtgctggaaatcctgccggacggtttcggcttc
ctgcgcgcggccgaagccagctacctggccggcccggacgacacctacatctcgcccagc
cagatccgccgcttcaacctgcgcaccggcgaccacctgtccggccgcatccgtttcccg
aaggacggcgagcgctacttcgcgctgtcgatcgtggacaccatcaacggtgagccgctg
gaagcgtccaagaacaaggtgctgttcgagaatctcacccccctgttcccgcgcaagcgc
ttcaccctggaacgcggcaacggctcgtccgaagacatcaccggccgcatcctcgacctg
atggcgccgcagggcaagggccagcgtgcgctgatcgtctctccgccgaaggccggtaag
acgatgatgatgcagcaggtggcgacggcgatcaccaccaaccatccggaagtgcacatg
atcgtgctgctcatcgacgagcgcccggaagaagtgaccgaaatgcagcgcaccgtgcgc
ggcgaagtcatcagctccaccttcgacgagccggccgcccgtcacgtgcaggttgccgaa
atggtgatcgagcgtgccaagcgcctggtggaacacaagaaggacgtggtgatcctgctc
gactcgatcacccgcctggcacgcgcctacaacaacgtggtgcccagctccggcaaggtg
ctcaccggcggcgtggacgccaacgccctgcaccgcccgaagcgcttcttcggtgccgcg
cgcaacgtggaggaaggcggcagcctgaccatcatcgccactgcgctggtcgacaccggc
agcaagatggacgaagtgatctacgaagagttcaagggcaccggcaacagcgaagtgcac
ctgaaccgtcgcatcactgaaaagcgcgtgtacccggccatcgacatcaaccgttccggc
acccgccgcgaagacctgctgatcgagccggagctgctgcagaagatctggatcctgcgc
aagctgctgcacccgatggacgaaatcgctgcgatggagttcctgctggacaagatgaag
aacaccaagtccaacgacgagttcttcggttcgatgaagcgctga
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