Stenotrophomonas aracearum: PDM28_18280
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Entry
PDM28_18280 CDS
T10111
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K02405
RNA polymerase sigma factor FliA
Organism
sarc Stenotrophomonas aracearum
Pathway
sarc02020
Two-component system
sarc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sarc00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PDM28_18280
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PDM28_18280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sarc03021
]
PDM28_18280
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
sarc02035
]
PDM28_18280
Transcription machinery [BR:
sarc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PDM28_18280
Bacterial motility proteins [BR:
sarc02035
]
Flagellar system
Flagellar assembly proteins
Stator
PDM28_18280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r4_2
HTH_23
KORA
HTH_50
Motif
Other DBs
NCBI-ProteinID:
WNH48580
UniProt:
A0ABY9YCJ7
LinkDB
All DBs
Position
complement(4075358..4076059)
Genome browser
AA seq
233 aa
AA seq
DB search
MQTDPADMEAWQTLRSGESAARDVLVARYLPWAEMLADRIHRRVAGLRVPREDLRQSATV
GLLEAMTRFDPSRGIPFPGYAIARVRGAIFNEVRQFSAGRDEHPGARVVERLQSMRRRPP
GDEVGPLEQLVEDIVGLGLAFLLDSEAAQADEQFCSAQEYTERSLMNTRLRWAMQRLPER
SRLLIQAHYFEHLPFKTLAERLGVSRGRVSQLHHVALLDLRRALSPAAPIERP
NT seq
702 nt
NT seq
+upstream
nt +downstream
nt
gtgcagaccgacccggctgacatggaggcgtggcagaccctgcgttcaggcgaaagcgcg
gcccgcgacgtactcgtggcgcgctacctgccgtgggcggagatgcttgccgaccggatc
caccgccgcgtggccgggctgcgcgtgccgcgcgaagacctgcgccagagcgccaccgtc
gggctgctcgaagccatgacacgattcgacccgtctcgcggaatcccctttccgggctat
gcgatcgcgcgcgtgcgtggggcaatcttcaacgaggtccggcagttcagcgccggccgt
gatgagcacccgggggcgcgggtggttgagcggctccagtccatgcgcaggcgccctccg
ggcgacgaggtcggtcccctggagcaactggtcgaggacatcgtgggactgggcttggcg
ttcctgctcgacagtgaagccgcccaggccgacgagcagttctgcagtgcccaggaatac
accgagcgcagcctgatgaacacacgtctgcgctgggcgatgcagcggctgccggagcgc
tcccggttgctgatccaggcccactacttcgagcaccttcccttcaagacgctggcggag
cgcttgggcgtaagcaggggcagggtgtcgcaactccatcatgttgccctgctggacctc
cgccgcgcgctgtcgcctgccgcgccgatcgaacggccgtga
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