Stenotrophomonas aracearum: PDM28_18705
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Entry
PDM28_18705 CDS
T10111
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
sarc Stenotrophomonas aracearum
Pathway
sarc03030
DNA replication
sarc03410
Base excision repair
sarc03420
Nucleotide excision repair
sarc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sarc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PDM28_18705 (polA)
03410 Base excision repair
PDM28_18705 (polA)
03420 Nucleotide excision repair
PDM28_18705 (polA)
03440 Homologous recombination
PDM28_18705 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sarc03032
]
PDM28_18705 (polA)
03400 DNA repair and recombination proteins [BR:
sarc03400
]
PDM28_18705 (polA)
Enzymes [BR:
sarc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PDM28_18705 (polA)
DNA replication proteins [BR:
sarc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PDM28_18705 (polA)
DNA repair and recombination proteins [BR:
sarc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
PDM28_18705 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PDM28_18705 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
WNH48662
LinkDB
All DBs
Position
complement(4174407..4177178)
Genome browser
AA seq
923 aa
AA seq
DB search
MSRLVLIDGSSYLYRAFHALPPLTNAAGEPTGALFGVVNMLRATLKERPEYVAFVVDAPG
KTFRDDLYADYKANRPPMPDDLRPQIEPMCQIVEALGLTILRIPGVEADDVIGTLALQGH
REGMTVTISTGDKDFAQLVRPGIELVNTMTGSRMDSDAAVMEKFGVRADQIVDLLALMGD
AVDNVPGVEKCGPKTAAKWLAEYQHLDGVMAAAPGMKGKIGENLRAALERLPLNRELVTI
RTDVSLDATSQTLPLRDPDVPVLGELYLRYGFTQALKELGGPAAAATAASEAPVSLRGTA
AGYAKSPAGEPATTLDPALSAPGEYETVLTTEQLQAWVARAAAAELIAFDTETDALDAMR
ANLVGISLAVEPGKAAYIPVGHDYPGAPAQLPRQQVLDALRPVLENPEKKKLGQHGKYDL
HVLRRHGVDVQGYHDDTMLESFVLNSTATRHDMDSLAMRYLGYTTIKFEDVAGKGAKQIP
FSQVGLDEASRYAAEDADITLRLHRVLQPQLLASAPLDNVYRSIEMPLVPVLARIEANGV
YIDSAELRRQSQDLGARMLAAQQKATELAGHTFSLDSPKQLQAVLFDELKLPALVKTPKG
QPSTNEEALEAIAEQHELPRVILEYRGLAKLRSTYTDKLPEMVNPDTGRVHTSYHQSGAA
TGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPPGHKLLACDYSQIELRIMAHLSEDPGLVR
AFEQGVDVHRATAAEVFSRALDEVTPNERRAAKAINFGLMYGMSAFGLARNLGIDRGQAQ
DYVALYFSRYPGVRDFMERMRQQARDQGYVETIEGRRLYLNDIHARNQGLRAGAERAAIN
APMQGTAADIIKRAMVKVDDWLQGQGGRARMILQVHDELVFETESEFLETLRSQVVELMS
SSAQLRVPLVVDAGVGDNWDEAH
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atgagccgattagtcctgattgacgggtccagttacctgtatcgcgcgttccacgcgctt
ccgccgctgaccaacgcggccggtgaacccaccggcgcgctgttcggcgtggtcaacatg
ctgcgcgccaccctcaaggagcgcccggagtacgtcgccttcgtggtcgacgcccccggc
aagaccttccgtgacgatctgtatgccgactacaaggccaaccgtccgccgatgccggac
gacctgcgcccccagatcgaacccatgtgccagatcgtcgaggcgctgggcctgaccatc
ctgcgcattcccggcgtggaagccgacgatgtgatcggcaccctggccctgcagggccac
cgcgagggcatgacggtcaccatttccaccggcgacaaggacttcgcccagctggtccgc
ccgggcatcgaactggtcaacaccatgaccggcagccggatggactcggacgcggcggtg
atggagaagttcggcgtgcgcgccgaccagatcgtcgacctgctggcactgatgggcgac
gccgtggacaacgttccgggcgtggagaagtgcggtcccaagaccgccgccaagtggctg
gccgagtaccagcacctggacggggtgatggccgccgcgccgggcatgaagggcaagatc
ggcgagaacctgcgcgccgcgctggagcgcctgccgctgaaccgcgagctggtcaccatc
cgcaccgatgtgtcgctggacgccacttcgcagaccctgccgctgcgcgacccggacgtg
ccggtgctgggcgagctgtacctgcgctatggcttcacccaggcgctgaaggagctcggc
ggcccggctgcggccgccaccgcggccagcgaggcgccggtgagcctgcgcggcaccgcc
gccggttatgcgaaatcaccggccggcgaaccggccaccacgctcgacccggcgctgtcg
gccccgggcgagtacgaaaccgtgctcaccaccgagcagctgcaggcctgggtcgcccgt
gccgcagcggccgagctgatcgccttcgacaccgaaaccgacgcgctcgacgcgatgcgc
gccaacctggtcgggatcagcctggcggtggagccgggcaaggccgcctacatcccggtc
gggcatgactaccccggcgccccggcgcagctgccgcgccagcaggtactggacgcgctg
cgcccggtgctggagaacccggagaagaagaagctcggccagcacggcaagtacgacctg
catgtactgcggcgccacggcgtggacgtgcagggctaccacgacgacaccatgctcgag
agcttcgtgctcaactccaccgccacccgccacgacatggattcgctggcgatgcgctac
ctgggctacaccaccatcaagttcgaggacgtggccggcaagggcgccaagcagatcccg
ttctcgcaggtggggctcgacgaagccagccgctacgcggccgaagacgccgacatcacc
ctgcgcctgcaccgggtgctgcagccgcagctgctggcctcggccccgctggacaacgtg
taccgcagcatcgaaatgccgctggtgccggtgctggcccggatcgaggccaacggggtc
tacatcgacagcgccgagctgcgccggcagagccaggacctgggcgcgcgcatgctggct
gcccagcagaaggccaccgagctggccgggcacaccttcagcctggactcgcccaagcag
ctgcaggcagtgctgttcgacgagctgaagctgccggcactggtgaagacgcccaagggc
cagcccagcaccaatgaagaggcgctggaggcgatcgccgagcagcacgagctgccgcgg
gtgatcctggagtaccggggcctggccaagctgcgcagcacgtacaccgacaagctgccg
gaaatggtcaaccccgacaccggccgcgttcacaccagctaccaccagtccggcgcggcc
accggtcggttgtcctcgtccgacccgaacctgcagaacatcccgatccgcaccgaggac
ggccgccgcatccgccgcgccttcgtggccccgccggggcacaagctgctggcctgcgac
tactcgcagatcgaactgcggatcatggcccacctgtccgaggacccgggcctggtccgc
gccttcgagcagggcgtggacgtgcaccgcgccaccgccgccgaagtattcagccgcgcg
ctggacgaggtcaccccgaacgagcggcgtgcggccaaggcgatcaacttcggcctgatg
tacggcatgagcgcgttcggcctggcccgcaacctgggcatcgaccggggccaggcgcag
gactacgtggcgctgtacttcagccgctatccgggcgtgcgcgacttcatggaacgcatg
cgccagcaggcccgcgaccagggctacgtggaaaccatcgaaggccgccggctgtacctg
aacgacatccacgcccgcaatcagggcctgcgcgccggtgccgagcgcgccgcgatcaac
gcgcccatgcagggcaccgcggcggacatcatcaagcgcgccatggtgaaggtggacgac
tggctgcaggggcagggcggtcgcgcgcggatgattctgcaggtccacgacgaactggta
ttcgaaaccgaaagcgagtttctggaaaccttgcgctcgcaggtggtcgaactaatgtcg
tcttctgctcagttgcgcgttccactggtggtcgacgccggcgtcggcgataactgggac
gaggcgcattaa
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