Stenotrophomonas aracearum: PDM28_19135
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Entry
PDM28_19135 CDS
T10111
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
sarc Stenotrophomonas aracearum
Pathway
sarc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sarc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PDM28_19135 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sarc03400
]
PDM28_19135 (recD)
Enzymes [BR:
sarc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PDM28_19135 (recD)
DNA repair and recombination proteins [BR:
sarc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PDM28_19135 (recD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
Viral_helicase1
AAA_11
UvrD_C_2
RecD_N
NAT10_TcmA_helicase
UvrD-helicase
AAA_22
SH3_13
SLFN-g3_helicase
UvrD_C
T2SSE
nSTAND3
DEAD
AAA_29
Mg_chelatase
Herpes_Helicase
AAA_28
NACHT
nSTAND_NTPase5
SRP54
NTPase_1
FtsK_SpoIIIE
TrwB_AAD_bind
KTI12
AAA_7
ATPase
TniB
AAA_24
Motif
Other DBs
NCBI-ProteinID:
WNH48734
UniProt:
A0ABY9YEH0
LinkDB
All DBs
Position
complement(4295482..4297365)
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AA seq
627 aa
AA seq
DB search
MSLLAALLQQGTLRTLDHALAQSLRRLQPDTPDAVLAAAALASLAVAQGHAGLDPQQPRR
LVDADLDWPLPGDWMAQLRASPWVDTPERDDHAAADAPLVLEHGLLYLRRYREYERRLAL
GLQRIARQPLPAHDPAALAPLFAQLFPQALDGIDHQARAAAVALRHPLVLVTGGPGTGKT
TTIARLLVLLAAQAQQANAALPRVALAAPTGRAAERMAESLRLALQRLRLVGVAAELAEA
LPTTGATLHRLLGVIPDSPRFRHHADNPLPFDVVVVDEASMIDLPLMTKLVEAVANGTRL
ILLGDPDQLPSVEAGDVLSAVLQASGDGLGTQADDATALRPLLAAAALQPLAAPLPFAGR
RVQLQRGYRQSDALDLAPLAAAVRVGDSTRALELLRHGQLAGVHFHEDQVDPLQQHRQTL
LAHWRGLGEAADPAQALAQAGQLRLLTALREGPQGARGLNERIEAALAGSARPGGGPRYF
HGRLLLITENSYRHRLFNGDIGLCLRSSEGAVLAWFPGDSPEHPRAFHPAALPAHESAFA
MTVHKAQGSEFDEVWLQLPRRDNRVLSRELVYTGMTRARRALHVLGSADVVQDALARHAS
RLSGLALRLGGGAAAREATAPAQGQLF
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgctcgccgcgctgttgcagcagggcaccctgcgcaccctggaccacgccttg
gcgcagagcctgcgccgactgcagccggacacgcccgacgcggtgctggccgcagccgcg
ctggcctcgctggcggtggcgcagggccacgccgggctggacccgcagcagccccggcgg
ctggtggatgccgacctggactggccgctgcccggcgactggatggcgcagctgcgcgca
tcgccgtgggtggatacgccggaacgcgacgaccatgcggccgccgatgcaccgctggtg
ctcgaacacggcctgctgtacctgcgccggtaccgcgaatacgaacggcggctggcgctc
ggcctgcagcgcattgcccggcaaccgctgcccgcgcacgacccggcggcgctggcgccg
ctgttcgcacagctgttcccgcaggcactggacggcatcgaccaccaggcacgcgccgct
gcagtggcactgcgccacccgctggtgctggtcaccggcgggcccggcaccggcaagacc
accaccatcgcgcgcctgctggtgctgctggccgcgcaggcgcagcaggccaacgccgcg
ctgccccgggtggcgctggccgcccccaccgggcgcgcggccgaacgcatggccgaaagc
ctgcgcctggccctgcagcggctgcgcctggtcggggtggccgccgaactggccgaggcc
ctgccgaccaccggcgccaccctgcatcgcctgctcggggtgattcccgattcgccgcgc
ttccgtcaccacgccgacaacccgctgccgttcgatgtggtggtggtggacgaggcgtcg
atgatcgacctgccgttgatgaccaagctggtcgaagcggtcgccaacggcacccggctg
atcctgctcggcgaccccgaccagctgccgtcggtggaggccggcgacgtgctcagcgcg
gtgctgcaggccagcggcgacggcctcggcacccaggccgacgatgccactgcgctgcgc
ccattgctggcggcggccgcgctgcagccgctggccgcgccgctgccgttcgccggccgt
cgcgtgcagctgcagcgcggctaccggcagagcgacgcgctggacctggcgccactggcg
gctgcggtgcgcgtgggcgacagcacccgtgcattggagctgctgcgccacggccagctg
gccggcgtgcacttccacgaagaccaggtggacccgctgcagcagcatcggcagaccctg
ctggcacactggcgaggcttgggcgaggcggcggacccggcccaggcgctggcccaggcc
ggccagctgcgcctgctgaccgcgctgcgcgaaggaccgcagggcgcgcgcggcctcaac
gaacgcatcgaagcggcgctggccggcagcgcgcgtccgggcggcgggccgcgctacttc
cacggccggctgctgctgatcaccgagaacagctaccgccaccgcctgttcaacggcgac
atcggcctgtgcctgcgcagcagcgaaggcgcggtgctggcctggttccccggcgacagc
ccggaacacccgcgcgcgttccacccggccgcgctgcccgcgcacgaaagcgcgttcgcg
atgaccgtgcacaaggcgcagggctcggaattcgacgaggtgtggctgcagctgccgcgt
cgcgacaaccgggtgctgtcgcgcgagctggtgtacaccggcatgacccgggcgcgccgg
gcgttgcatgtactgggcagtgcggacgtggtgcaggacgcattggcgcggcacgccagc
cggttgtccggactggcgctgcggctggggggcggtgcagcagcccgtgaggcgaccgca
ccggcacaaggccagctgttctga
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