Stenotrophomonas aracearum: PDM28_19140
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Entry
PDM28_19140 CDS
T10111
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
sarc Stenotrophomonas aracearum
Pathway
sarc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sarc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PDM28_19140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sarc03400
]
PDM28_19140
Enzymes [BR:
sarc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PDM28_19140
DNA repair and recombination proteins [BR:
sarc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PDM28_19140
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
nSTAND_NTPase5
AAA_22
AAA_11
NPHP3_N
Motif
Other DBs
NCBI-ProteinID:
WNH48735
UniProt:
A0ABY9YDH3
LinkDB
All DBs
Position
complement(4297362..4301009)
Genome browser
AA seq
1215 aa
AA seq
DB search
MSDLDLQHDPYLSLPLDGVRLIEASAGTGKTFTLATLFTRLVVEQGYRIGQILAVTFTDA
ATQELRKRIRERLALAAQLLARAPSDDEAPDAQLTRYLLQRELDRGRETPAALAQRLQTA
ADEIDLAAIFTIHGFCTRVLREHALESGHTFDPPTLLPSERELHDQLGADLWRVHANDPA
RVDALTRLWSDPGALARDLSALIKPLPLLPPVPVQRLDDPSAALQAAAAALVQAIDAHTE
DAQASIANAFERKIFDGRRARRPSFDKAFAELLAGRASRSWPRSDKLHLGKLLPVALLGF
CKEDQQGLCPASPLFDALQTWWHAADSHDQWLRQQALLLLHDLRGQARERLDELKRVGRV
QTYDDLIDGVAAALEGPHRAALVQQLRAQYPIALVDEFQDTDDRQWGIFQRVFGDSPETR
EAGLDPALFLIGDPKQAIYGFRGGDIHTYLKAKREAVAAPALNRNFRSRPGVLRALQALY
DAAGERAFLEADIAFEPVLPGSTRSDADFLRDDQSAPGLTLRLLRSDDGADLKADPSRQQ
ATDACVAAIHQVLLEGRQGRALLRGMPVQPGDIAVLVRRHHEATRIQQALSAVGIPAVAA
GKQSLYATAEARELRVLLLALLQPADEGRLRAALSTVLLGENAAAIDAMERDGDPQRAFQ
TRLLLWRERWLRGGPFAVIADLCAEHAERLLGLLDGERRLTNYLQLGELLQQAAGQALGM
HGLLDWLQVQMAHADQDDEQQLLRLESDARRVQIITLHKSKGLEYPLVFLPFVGIGSGGA
NTDANCTVYADGRRELHWKLERDEAWNAASARAAQEQEAEDARLLYVGLTRAEHALWIAA
GDLAGLAKTRLAPMLSDLDALRSNPDIQVIEGPVEPRPAQLPVEREGELPPVRAVTRRVP
HDWWVYSFTQLANADAGHDTDAMATEAPAPAADEPAGGELPLEVEPLAPSEPQPEIDPRF
MGSRFGNVLHDALENTDFARWSVWRAGDAAPPEQAEVLRDSLRAEGYADADLDDGVAVLV
PLVGQTLTVQLPEGGALCSLPAQDRRAEIEFHFAMQATAVPALLQLLHRHGLVRDRRSFG
TRRQLEGLMTGKIDLTYVRDGRWYVLDYKSNRLPGYDAARLAEAMQHSEYDLQALIYTVA
LHRWLRFRLGAGYDLARDMGGIRYLFCRGLEAGRADAPGVHAQRFDPALVEAMDALFAGG
ADAHAGLVARARGEA
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacctggacctgcagcacgatccctacctgtccctgccgctggacggcgtgcgc
ctgatcgaagccagcgccggcaccggcaagaccttcaccctggccacgctgttcacccgg
ctggtggtggagcagggctaccgcatcggccagatcctggcggtgacctttaccgacgcc
gccacccaggagctccgcaagcgcatccgcgagcgtctggccctggctgcgcagctgctg
gcgcgcgcgccctcggacgacgaagcgcccgacgcgcagctcacccgctacctgctgcag
cgcgaactggaccgcggccgcgaaaccccggcggcgctggcacagcgcctgcagaccgcc
gccgacgaaatcgatctcgccgcgatcttcaccatccatggcttctgcacccgggtgctg
cgcgaacacgcgctggagagcggccacaccttcgacccgccgaccctgctgcccagcgaa
cgcgaactgcacgaccagctcggcgccgacctgtggcgggtgcacgccaacgaccctgca
cgggtcgatgcgctgacccggctgtggtcggatccgggcgcgctggcacgcgacctgtcg
gcgctgatcaagccgctgccgctgctgccacccgtgcccgtgcagcggctggacgacccc
agtgcagcgctgcaggctgccgccgcggcactcgtgcaggccatcgacgcgcacaccgaa
gacgcccaggccagcatcgccaacgccttcgagcgcaagatcttcgacggccgccgcgcg
cgccggcccagcttcgacaaggcgtttgcggagctgttggcaggccgcgcgtcgcgcagc
tggccgcgcagcgacaagctgcacctgggcaagctgctgccggtcgcgttgctcggcttc
tgcaaagaggaccagcagggcctgtgcccggcctcgccgctgttcgacgcgctgcagacc
tggtggcacgctgccgacagccacgaccagtggctgcgccagcaggcgctgctgctgctg
cacgacctgcgcggccaggcccgcgaacgcctcgatgaactgaagcgggtcggccgggtg
cagacctacgacgacctgatcgacggcgtggctgccgcgctggaaggcccgcaccgcgcc
gcgctggtacagcagctgcgcgcgcagtacccgatcgccctggtggacgaattccaggac
accgacgaccgccagtggggcatcttccagcgcgtgttcggcgattcgccggaaacccgc
gaggcgggcctcgacccggcgctgttcctgatcggcgatcccaagcaggccatctacggc
ttccgcggcggcgacatccacacctacctcaaggccaagcgtgaagcggtcgccgcaccc
gcgttgaaccgcaacttccgctcgcgcccgggcgtgctgcgcgcgctgcaggcgttgtac
gacgcggcgggcgaacgcgccttcctggaagcggacatcgctttcgaaccggtgctgcct
ggcagcacccgcagcgacgccgacttcctgcgtgacgaccagtccgcaccgggcctgacc
ctgcgcctgctgcgcagcgacgacggcgccgacctcaaggccgacccgtcgcgccagcag
gccaccgacgcctgcgtagcggcaatccaccaggtgctgctggaaggccggcagggccgc
gcgctgctgcgcggcatgccggtgcagcccggcgacatcgccgtgctggtgcgccgccac
catgaagccacccggatccagcaggcgctgagcgcggtcggcattccagcggtggccgct
ggcaagcagagcctgtacgccactgccgaggcacgcgaactgcgcgtgctgctgctggcg
ctgctgcagccggccgacgaaggccgcctgcgtgccgcgctgtcgaccgtgctgctcggt
gaaaacgcggcggcgatcgacgcgatggaacgcgacggcgacccgcagcgcgcgttccag
acccggctgctgctgtggcgcgaacgctggctgcgcggcggaccgttcgcggtcatcgcc
gacctgtgcgccgaacatgccgaacgcctgctcggcctgctcgatggcgaacgccgcctc
accaactacctgcagctgggcgagctgctgcagcaggcggccggccaggcgctgggcatg
cacggcctgctggactggctgcaggtgcagatggcgcacgccgaccaggacgacgaacag
cagctgctgcggctggaatcggacgcgcgccgggtgcagatcatcaccctgcacaagagc
aaggggttggagtaccccttggtgttcctgcccttcgtcggcatcggcagcggcggcgcc
aacaccgatgccaactgcacggtctacgccgacgggcgccgcgagctgcactggaagctg
gagcgcgacgaagcgtggaacgcggccagcgcgcgcgccgcgcaggagcaggaggccgaa
gatgcgcgcctgctgtacgtgggcctgacccgcgccgagcatgccttgtggatcgccgcc
ggcgacctcgccggattggcgaagacccggctggcgccgatgctgtccgacctggatgcg
ttgcgatcgaacccggacatccaggtgatcgaaggccccgtggagccgcgccccgcgcag
ctgccggtggaacgcgaaggcgaactgccaccggtgcgcgcggtcacccggcgggtgccg
cacgactggtgggtgtacagctttacccagctggccaatgcggatgcgggccacgacacc
gacgccatggccaccgaagcgccggccccggccgccgacgaaccggccggcggcgagttg
ccgctggaggtcgagccgctggcgccgagcgaaccgcagccggagatcgatccgcgcttc
atgggcagccgcttcggcaacgtgctgcacgatgcgctggagaacaccgacttcgcgcgc
tggtccgtctggcgcgctggcgatgcggcgccgccggaacaggccgaggtgctgcgcgac
tcgctgcgcgccgaaggctatgccgacgccgacctggacgatggcgtggcagtgctggtg
ccgctggtcgggcagaccctgaccgtgcaactgcccgaaggcggcgcgctgtgcagcctg
cccgcgcaggaccggcgcgccgagatcgagttccacttcgccatgcaggccactgccgtg
ccggcgctgctgcagctgctgcaccggcacggactggtccgcgaccggcgcagcttcggc
acccgccgccagctggaagggctgatgaccggcaagatcgacctcacctacgtgcgcgac
ggacgctggtacgtgctcgactacaaatccaaccggctccccggctacgacgctgcgcgc
ctggccgaggccatgcagcacagcgagtacgacctgcaggcgctgatctacaccgtggcc
ctgcaccgctggctgcgcttccgcctcggcgccggctacgacctggcgcgcgacatgggc
ggcatccgctacctgttctgccgtggactcgaagccggccgcgccgacgcgccgggcgtg
catgcgcagcgcttcgacccggcgctggtggaggcgatggacgcgctgttcgcaggcggc
gccgacgcccacgccgggctggtggcacgcgcgcggggtgaagcatga
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