Streptomyces argyrophylli: HKX69_08990
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Entry
HKX69_08990 CDS
T09378
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sarg
Streptomyces argyrophylli
Pathway
sarg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sarg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HKX69_08990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sarg03019
]
HKX69_08990
Messenger RNA biogenesis [BR:
sarg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HKX69_08990
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
QJS09641
UniProt:
A0A6M4PFC1
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Position
complement(2074277..2075962)
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AA seq
561 aa
AA seq
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MSHPHPELGAPPPLPQGGLRVTPLGGLGEIGRNMTVFEYGGRLLIVDCGVLFPEEEQPGI
DLILPDFSSIRDRLDDIEGIVLTHGHEDHIGGVPFLLREKPDIPLIGSKLTLALIEAKLQ
EHRIRPYTLEVAEGNRERIGPFDCEFVAVNHSIPDALAVAIRTPAGMVVHTGDFKMDQLP
LDNRLTDLHAFARLSEEGIDLLLSDSTNAEVPGFTPHERDISSVLRQVFAGARKRIIVAS
FASHVHRIQQILDAAQEYGRRVAFVGRSMVRNMGIARDLGYLKVPPGLVVDVKTLDDLPD
HEVVLVCTGSQGEPMAALSRMANRDHQIRIVQGDTVILASSLIPGNENAVYRVINGLTRW
GANVVHKGNAKVHVSGHASAGELLYFYNICRPKNLMPVHGEWRHLRANAELGALTGVPHD
RIVIAEDGVAVDLVEGKAKISGKVQAGYVYVDGLSVGDVGEPALKDRKILGDEGIISVFV
VVDASTGKITGGPHVQARGSGIEDSAFADVLPKITEVLERSAQDGVVEPHQLQQLVRRTL
GKWVSDTYRRRPMILPVVVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcatccgcatcctgaactcggcgcgccgcctccgctgccgcagggcggccttcgg
gtcaccccgctcggcggcctcggcgagatcggccgaaacatgacggtcttcgagtacggc
ggtcgtctgctgatcgtcgactgcggagtgctcttccccgaggaggagcagcccggaatc
gacctgatcctgccggacttctcgtccatccgggaccgcctcgacgacatcgagggcatc
gtcctcacgcacggccacgaggaccacatcggcggcgtccccttcctcctccgcgagaag
ccggacatcccgttgatcggctccaagctcaccctcgcgctgatcgaggccaagctccag
gagcaccggatccgcccgtacaccctggaggtggcggaggggaaccgtgagcgcatcggc
cccttcgactgcgagttcgtcgccgtcaaccactccatcccggacgccctggccgttgcc
atccgcacccccgccggcatggtggtccacaccggcgacttcaagatggaccagctcccg
ctggacaaccgcctcacggacctgcacgccttcgcgcgcctgagcgaggagggcatcgac
ctcctcctcagtgactccacgaacgccgaggtcccgggcttcaccccgcacgagcgggac
atctccagcgtcctgcggcaggtcttcgccggagcccgcaagcggatcatcgtggcgagc
ttcgccagccatgtccaccgcatccagcagattctggacgcggcccaggagtacggccgc
cgggtcgccttcgtcggccgctccatggtccgcaacatgggcatcgcccgcgacctcggc
tacctgaaggtgccgccgggcctggtggtcgacgtcaagacgctggacgacctgcccgac
cacgaggtggtcctcgtctgcacgggctcccagggcgaaccgatggcggccctgtcccgc
atggccaaccgcgaccaccagatccgcatcgtccagggcgacacggtcatcctggcgtcc
tcgctgatccccgggaacgagaacgcggtctaccgcgtgatcaacggcctgacccgctgg
ggcgccaacgtcgtccacaagggcaacgcgaaggtgcacgtctccggccacgcgtccgcg
ggcgagctgctgtacttctacaacatctgccgcccgaagaacctgatgcccgtccacggc
gagtggcgccacctgcgggcgaacgcggagctgggtgccctgaccggcgtcccgcacgac
cggatcgtcatcgccgaggacggcgtggccgtcgacctggtcgagggcaaggcgaagatc
tccggcaaggtccaggcgggttacgtctacgtagacggcctctcggtcggcgacgtcggc
gagccggcgctgaaggaccggaagatcctcggcgacgagggcatcatctcggtcttcgtg
gtcgtggacgcctccaccggcaagatcaccggcggcccgcacgtccaggcccggggctcc
ggcatcgaggactcggccttcgccgacgtcctcccgaagatcaccgaagtcctggagcgg
tccgcccaggacggcgtcgtggagccccaccagctccagcagctcgtccgccggaccctc
ggcaagtgggtctcggacacctatcgccgcaggccgatgatcctgccggtggtcgtggag
gtctga
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