Streptomyces argyrophylli: HKX69_25985
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Entry
HKX69_25985 CDS
T09378
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
sarg
Streptomyces argyrophylli
Brite
KEGG Orthology (KO) [BR:
sarg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sarg03019
]
HKX69_25985 (hrpB)
Enzymes [BR:
sarg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HKX69_25985 (hrpB)
Messenger RNA biogenesis [BR:
sarg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HKX69_25985 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
AAA_19
ResIII
AAA_22
AAA_30
AAA_25
nSTAND3
HA2_N
AAA_11
Helicase_RecD
AAA
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
QJS12514
UniProt:
A0A6M4PPF5
LinkDB
All DBs
Position
complement(5803345..5805870)
Genome browser
AA seq
841 aa
AA seq
DB search
MIRYDALDALPVRGALPALAEALEGHGTAVLVAPPGTGKTTLVPLVLAGLVGDGPARRVV
VAEPRRIAARAAARRMAWLLGERPGGSVGFTVRGERAVGRHTRVEVVTTGVLLQRLQRDQ
ELAGVDVVVLDECHERHLDADTAAAFLWDVRQALRPELRLVAASATTDTEGWARLLGGAP
VVEAAGVAHPVEVVWAPPARPVRPPQGMRVDPALLAHVASVVRRALAERTGDVLCFLPGV
GEIARVAGLLGDLGDVDVLRVHGRAPAAVQDAVLVPGERRRVVLATSVAESSLTVPGVRV
VVDSGLAREPRVDHARGLSGLTTVRASRAAGRQRAGRAGREAPGAVYRCWAEAEDGRLPA
FPAPEIKVADLTAFALQAACWGDPDASGLALLDPPPAGAMAAARSALTAVGAVDPAGRAT
EVGARMARLGVHPRLGRALLDTGGRGAEVVALLSEEVPREYGDDLAGALRRVRRGGDAYA
ARWSAEVRRLRGVSEEFSHPPARDGRREGAVRGGPGIGDDRLAGLVVALAFPERVARLDG
GSYLMASGTRAEPAEGSALRGAPWIVVAVADRPSGKGHARVLLGAAVDEDVARAAAGALR
TEEDEVRWADGDVVARHVERLGAIEIAVRPLKDAGPALVRGALLDGLRQDGLGLLRWPPQ
AELLRQRLAFLRAHLGEPWPDVSDAALHARVDEWLEPELSRAGRRADLARIDAGQALARL
LPWASGEAARLDQLAPERIAVPSGSMVRIDYRDPERPVLAVKLQEMFGLRETPAVAGVPL
LVHLLSPAGRPAAVTADLTSFWADGYRAVRAELRGRYPKHPWPEDPATAEPTRHTTARLR
R
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
gtgatccgttacgacgccctggacgccctgcccgtgcgcggcgcccttcctgccctggcc
gaggccctggaggggcacggcaccgccgtcctcgtcgcgccgcccggcaccggcaagacg
acgctggtgccgctggtgctggccgggctcgtcggcgacggccccgcgcggcgggtcgtg
gtggccgagccgcggcggatcgcggcgcgggcggcggcgcggcgcatggcgtggctgctg
ggcgagaggcccggcgggagcgtcggcttcacggtgcgcggcgagcgggccgtggggcgg
cacacgcgcgtggaggtcgtgacgaccggtgtcctgctgcagcggctccagcgcgaccag
gagctggccggagtggacgtcgtcgtcctcgacgagtgccacgagcggcatctggacgcg
gacacggcggccgcgttcctgtgggacgtgcggcaggcgctgcggccggagctgcggctg
gtggccgcgtcggcgaccaccgacaccgaggggtgggcgcggctgctcggcggggcgccg
gtggtcgaggcggcgggcgtggcgcatccggtggaggtcgtgtgggcgcccccggcgcgt
ccggtccggccgccgcaggggatgcgcgtggatccggcgctgctcgcccatgtggcgtcg
gtggtgcggcgggcgctggccgagcggaccggggacgtgctgtgcttcctgcccggcgtc
ggcgagatcgcgcgcgtggcgggcctgctgggggatctcggtgacgtggacgtgctccgg
gtgcacgggcgggcgccggccgccgtgcaggacgcggtgctcgtgcccggggagcggcgc
cgggtggtgctggcgacgtccgtggccgagtcgtcgctgaccgtgccgggggtacgggtc
gtggtcgactccgggctggcgcgggaaccccgcgtggatcacgcgcgcgggctgagcgga
ctgacgaccgtacgggcgtcgcgggcggcggggcggcagcgggcggggcgggccgggcgt
gaggcgccgggtgccgtgtaccggtgctgggcggaggccgaggacggccgcctgccggcg
ttcccggcgccggagatcaaggtggccgacctgaccgcgttcgcccttcaggcggcctgc
tggggcgatccggacgcctcggggctggcgctgctcgatccgccgccggccggggcgatg
gccgcggcgcgctcggctctgacggcggtgggggcggtggaccccgccgggcgggccacg
gaggtcggcgcgcggatggcccggctgggggtgcacccgcggctggggcgggccttgctg
gacacgggcggtcgaggggccgaggtggtcgccctgctctccgaagaggtgccccgggag
tacggggacgatctcgccggcgcgctgcgccgtgtccggcgcggtggtgacgcgtacgcc
gcgcggtggtcggcggaggtccggcggctgcgcggcgtctcggaggagttctcccacccg
ccggcccgcgacggccggcgagagggcgccgtccggggtggcccgggcatcggtgacgac
cggctcgccggactcgtcgtcgccctggcctttcccgagcgggtcgcccggctcgacggc
gggtcgtacctcatggcgtccgggacgcgggcggaaccggccgaggggtcggcgctgcgc
ggtgctccctggatcgtcgtggccgtcgccgaccggccctccggcaagggccacgcgcgc
gtgctgctcggcgcggccgtggacgaggacgtggcgcgggccgccgccggcgcgcttcgg
acggaggaggacgaggtgcgctgggccgacggggacgtcgtggcccggcatgtcgaacgg
ctgggcgcgatcgagatcgcggtccggcccctgaaggacgccggcccggctctcgtacgc
ggcgccctcctcgacgggctccggcaggacgggctcgggctgctccgctggccgccgcag
gcggagctgctgcggcagcggctggcgttcctccgggcgcacctgggcgagccgtggccg
gacgtgtccgacgccgcgctgcacgcgcgcgtggacgagtggctggaacccgagctgagc
cgggccgggcggcgggccgatctcgcccggatcgacgccggacaggcactcgcgcggctg
ctgccctgggcgagtggggaggccgcccggctggaccagctggcgcccgagcggatcgcc
gtaccgagcgggtccatggtccggatcgactaccgggatcccgagcgcccggtcctcgcc
gtcaagctccaggagatgttcgggctgcgggagacgccggccgtcgcgggcgtgcccctg
ctcgtgcacctgctctcgcccgccgggcggcccgccgccgtgacggccgacctcacctcc
ttctgggcggacggctaccgggccgtccgcgcggagctgcgcggacggtaccccaagcac
ccgtggccggaggaccccgcgaccgccgagcccacacggcacacgaccgcgcggctcagg
cgctga
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