Sphingomonas aliaeris: H5J25_00935
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Entry
H5J25_00935 CDS
T07559
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
sari
Sphingomonas aliaeris
Brite
KEGG Orthology (KO) [BR:
sari00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
H5J25_00935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sari03019
]
H5J25_00935
03009 Ribosome biogenesis [BR:
sari03009
]
H5J25_00935
04131 Membrane trafficking [BR:
sari04131
]
H5J25_00935
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sari04147
]
H5J25_00935
Messenger RNA biogenesis [BR:
sari03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
H5J25_00935
Ribosome biogenesis [BR:
sari03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
H5J25_00935
Membrane trafficking [BR:
sari04131
]
SNARE
SNARE associated proteins
Others
H5J25_00935
Autophagy
Aggrephagy
Other aggrephagy associated proteins
H5J25_00935
Exosome [BR:
sari04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
H5J25_00935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
CDC48_2
AAA_5
AAA_22
AAA_33
AAA_2
AAA_14
IstB_IS21
TIP49
nSTAND3
RNA_helicase
AAA_28
AAA_25
DUF815
AAA_24
AAA_18
NPHP3_N
ATPase_2
Mg_chelatase
AAA_7
Sigma54_activat
ABC_tran
Zeta_toxin
Parvo_NS1
AAA_17
TsaE
AAA_30
Vps4_C
AAA_11
ATPase
PhoH
NB-ARC
SLFN-g3_helicase
Zot
Motif
Other DBs
NCBI-ProteinID:
QQV77434
UniProt:
A0A974NUQ8
LinkDB
All DBs
Position
complement(228220..230514)
Genome browser
AA seq
764 aa
AA seq
DB search
MADSETPVRKLQVANARPEDSGRGLAHVPRSLMVALGMTEGDVIEIVGKSSTPARAVAPY
PEDEGLDLLRIDGLQRANAGVGSGDFVEVRKVESKPATRIVFAPAQQNLRLQGSSQALKR
TFFGRPVTQGDVVATAGQQRVDNMPPGVQQFLRAPAYALQEIRLAVIATTPKGVVHVDEN
TEIELRPEYEEPKEARRADVTYDDIGGMAGTIDQLREMVELPLRYPELFQRLGVDPPKGV
LLYGPPGTGKTRLARAVANESAAEFFLINGPEIMGSAYGESEQRLRQVFEEAEKASPSIV
FIDEIDSIAPKRGQVSGEAEKRLVAQLLTLMDGLEARANVVVIAATNRPEAIDEALRRPG
RFDREIVVGVPDERGRREILGIHTRGMPLGDRVDLDELASTTYGFVGADLAALAREAAIE
AVRKIMPKLNLSEGTIPPEVLDELAVTREDFLDALKRVQPSAMREVMVEAPKVRWEDVGG
LDTAQMRLKEGVELPLRDPDAFRRLGIRPAKGFLLYGPPGTGKTLLAKAVAREAQANFIA
TKSSDLLSKWYGESEQQIARLFSRARQVAPCVLFIDELDSLVPTRGSGMGEPQVTERVVN
TILAEMDGLEELQSVVVIGATNRPNLIDPALLRPGRFDELIYVGLPDTDGRRRILNIQTA
KMPLAPDVDLAVLAGRTDRFTGADLEDLVRRAGLVALRSSLAVSHVTMAHFEEALTDSRA
SVTPDMERDYAQIAAQLKQDASALQPLGFISPGQLRPHGPKGTD
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atggctgatagcgaaacccccgtccgtaaattgcaggttgcgaacgcccgccccgaagac
agcggacgcggtctggcgcatgttccacgatcgctgatggtggcgcttggcatgaccgag
ggcgacgtgatcgagatcgtcggcaagtcgtcgacgcccgcacgcgcggtcgcgccctat
ccggaagacgagggcctggaccttttgcggatcgacgggttgcagcgcgccaatgcgggc
gtcggttcgggtgatttcgtcgaggttcgcaaggtggaatcgaagccggcgacgcgtatc
gtgttcgcgccggcgcagcagaatcttcgcctgcaaggctcgtcccaggcattgaagcgc
accttcttcggtcgccccgtcacgcagggcgatgtcgttgcgaccgcgggacagcagcgg
gtcgacaacatgccgccgggcgttcagcagtttctccgcgcgcccgcttatgcattgcag
gaaatccgtctcgcggtgatcgccaccacgccgaagggcgtggttcatgtcgacgagaat
accgagatcgaacttcgccccgaatatgaggagccgaaggaagcgcgtcgcgccgacgtg
acgtatgacgatatcggcggcatggccggtacgatcgaccagctgcgcgagatggtcgaa
ctgccgctgcgctatcccgaactgttccagcgccttggcgtcgatccgccaaagggtgtt
ctgctctacggcccacccggtaccggcaagacgcggctcgcccgcgcagtcgcaaacgaa
tccgccgcggaattcttcctgatcaacggccccgagatcatgggatcggcgtatggagaa
tccgaacagcggctgcgtcaggtgttcgaggaagccgaaaaggcgtcgccgtcgatcgtc
ttcatcgacgaaatcgactcgatcgctccgaagcgcggacaggtttccggcgaggcggaa
aagcgtctggttgcgcaattgctgacgctgatggacgggctggaggcgcgcgccaatgtc
gtggtgatcgccgcgaccaaccgccccgaggcgatcgacgaggcgttgcggcgtcccggc
cggttcgatcgcgagatcgtcgtgggggtgcccgacgagcgcggccggcgcgaaatcctc
ggcatccacacgcgcggtatgccacttggcgatcgggtcgatctcgatgaactggcatcg
acgacctacggcttcgtcggggccgatctcgcggcgcttgcccgcgaggcggcgatcgag
gccgtgcgcaagatcatgccgaagctgaacctgtccgaaggcacgatcccacccgaagtg
ctcgacgaactggcggtcacgcgcgaggattttctcgacgcgttgaagcgcgtccagccg
agcgcgatgcgcgaggtgatggtcgaggcaccgaaagtccgctgggaggatgtcggcggg
ctcgacaccgcgcagatgcggctgaaggaaggcgtcgaactgccgctgagggatcccgac
gcgttccgccggctgggcattcgtccggccaaggggttcctgctctacggcccgcccggc
accggcaagaccctgctcgccaaggcggtcgcgcgcgaggctcaggcgaacttcatcgcg
accaagtcgagcgacctgctcagcaaatggtatggcgagagcgaacagcagatcgcgcgc
ctgttcagccgtgcgcgtcaggtcgcgccgtgtgtcctgttcatcgacgaactcgactcg
ctcgtcccgacgcggggcagcggcatgggcgagccacaggtcaccgaacgcgtcgtcaac
actatcctggccgagatggacgggctggaggagctgcaatccgtcgtcgtcatcggcgcg
accaaccggccgaacctgatcgatcccgcattgctccgtccgggccgtttcgacgaactc
atctatgtcggcctgcccgatacggacggtcgtcggcgcatcctgaacatccagacggcg
aagatgccgctcgcaccggatgtcgatctcgccgtcctggcggggcggacggatcgcttc
acgggcgccgatctggaggatctcgtccgccgtgccggtctcgtcgcattacggtcctcg
cttgccgtgtcgcatgtgacgatggcgcatttcgaggaagccctgaccgactcccgcgcc
tccgtcacgccggacatggagcgcgactatgcgcagatcgcggcgcagctgaagcaggac
gcatccgccctgcaacctttggggttcatctcgcccggccagttgcggccgcacggcccg
aagggcacggactga
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