Sphingomonas aliaeris: H5J25_08035
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Entry
H5J25_08035 CDS
T07559
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
sari
Sphingomonas aliaeris
Brite
KEGG Orthology (KO) [BR:
sari00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sari03032
]
H5J25_08035
03400 DNA repair and recombination proteins [BR:
sari03400
]
H5J25_08035
Enzymes [BR:
sari01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
H5J25_08035
DNA replication proteins [BR:
sari03032
]
Prokaryotic type
DNA Topoisomerases
H5J25_08035
DNA repair and recombination proteins [BR:
sari03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
H5J25_08035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
QQV78556
UniProt:
A0A974NX76
LinkDB
All DBs
Position
complement(1712076..1713083)
Genome browser
AA seq
335 aa
AA seq
DB search
MSARIIYHDDSEPGITRKKMSHGWGYFAPDGSRITDRDEIDRLNAIGLPPAYRDAWFCPN
PNGHIQAVGWDEKGRKQYRYHLGFREKRDLEKYDLCAPFGRALPKLRARVEKDLKRRGLG
KAAAVAAIVRLLDLGHVRVGNEGYVKENKSYGATTLRKRHAKLKGQTLKLQYKAKSGKLR
TLTITDGSLSRFVKKCSDLNCQHLFSWVDDTGGCHPVTSSDVNDYIREAMGEDYTAKHFR
TWSASAIAFETLAIADHDIGLKMLLEPVTEALGNTPAIARKSYVHPMLIALVKEGQSEFR
MGLKLPRRSQYLSRAERGLIDFLERAKPVRTAKAA
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcacgcattatctatcacgacgattccgaacccggcatcacccgcaagaagatg
tcgcatggctggggctatttcgcccccgacggcagccgcatcaccgatcgcgacgagatc
gaccggctgaatgcgatcggcctgccccccgcttaccgcgacgcgtggttctgtcccaac
ccgaatggccatatccaggcggtcggatgggatgaaaagggccgcaagcaatatcgctat
cacctcggtttccgtgaaaagcgcgatctggagaaatacgatctgtgcgcgccgttcggg
cgggcgttgcccaaacttcgggcgcgggtcgaaaaggatctgaaacggcgcgggcttggc
aaggccgccgccgtcgccgcgatcgtccggttgctcgacctgggccatgttcgcgtcggg
aacgaaggatatgtgaaggaaaacaagagctatggcgcgaccacgctgcgcaagcggcac
gccaagctgaagggccagacgctgaagctgcaatataaggcgaaatcggggaagctgcgc
acgctgaccattaccgacggatcgctcagccggttcgtcaagaaatgctcggacctgaac
tgccagcatctgttcagctgggtcgacgacacgggcgggtgccatccggtcacgtcatcc
gacgtcaacgactatatccgcgaggcgatgggcgaagattacaccgccaagcatttccgc
acctggagcgccagtgcgatcgcattcgagacgctcgccattgccgatcacgacatcggc
ctgaagatgctgctggagccggttaccgaagcgctcggcaacacgccggccatcgcgcgc
aagtcgtacgttcaccctatgctcatcgcgctcgtgaaagagggacagtccgaattccgc
atgggcctaaagctgccgcggcggtcgcaatatctctcccgcgcggaacggggtctgatc
gatttcctcgagcgcgccaaaccggtgcgtaccgccaaggccgcctga
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