Sphingomonas aliaeris: H5J25_08485
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Entry
H5J25_08485 CDS
T07559
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
sari
Sphingomonas aliaeris
Pathway
sari02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sari00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
H5J25_08485 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sari03021
]
H5J25_08485 (rpoD)
Transcription machinery [BR:
sari03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
H5J25_08485 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Portal_T4
Motif
Other DBs
NCBI-ProteinID:
QQV78624
UniProt:
A0A974S5J4
LinkDB
All DBs
Position
complement(1803254..1805281)
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AA seq
675 aa
AA seq
DB search
MAKTDMAEATDITENGDAPLIDLNDASIKKVIARAKKRGYITYEQLNEALPQGEMSSDQI
EDISSALSEMGINIVENDEAGEEGDEKPADEDEVGSVDASDDGSQQIDVKKKEVVDRTDD
PVRMYLREMGAVELLSREGEIAIAKRIEAGRDTMILGLCGSPITFNAIIDWSTALNEGTM
QLREIMDLDAMLSKDPAPESLTDDEEGSGEISEKTAGPSFKEEEEPEEAPADEDEDSMQE
RRTPRPSDDEEEDNTLSLAQMEEQLKPIALERFASITALYKKFSKMQGQRLDAMGAGGEL
SAADERKYQKLREELTAEVESVQFHNAKIEYLVDQLYAYNRRLTALGGQMLRLAERHKVP
RKDFLDRYIGHELDEQWIPNLGKLDKKWAAFVAAETDSVDRIRMEISEISQQTGMALPEF
RRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK
FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQFLHEQGREP
TPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQA
NLKETVTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKL
KHPSRSRKMRSFLDQ
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaacggacatggcggaagcgaccgacatcactgaaaacggcgatgctccgctg
atcgatctcaacgatgcgtcgatcaagaaggtgatcgcccgcgccaagaagcgcggctac
atcacctacgaacagctgaacgaagcgctgccgcagggcgagatgtcgtccgatcagatc
gaggatatctcctcggcgctgagcgagatgggcataaacatcgtcgagaatgacgaagcc
ggcgaggaaggcgacgagaagcctgcggacgaggatgaggtcggatcggtcgacgcatcc
gacgacggatcgcaacagatcgacgtcaagaagaaggaagttgtcgatcgcaccgacgat
cccgtccgcatgtacctgcgtgagatgggcgccgtcgaattgctcagccgcgagggcgag
atcgccatcgccaagcggatcgaggccggtcgcgacacgatgatcctcggcctgtgcgga
tcgccgatcaccttcaacgcgatcatcgactggtcgaccgcgctcaacgaaggcacgatg
cagctgcgcgagatcatggatctcgacgcgatgctgtcaaaggatcccgcccccgaatcg
ctcaccgacgacgaggaaggatcgggcgagatcagcgagaagaccgccggcccgtccttc
aaggaagaggaagaaccggaagaggctcccgccgacgaggacgaggattcgatgcaggag
cggcgcacgccgcgtccgtccgatgacgaggaggaggacaacaccctctcgctcgcgcag
atggaagaacagttgaagccgatcgcgctcgaacgcttcgccagcatcaccgcgctctac
aagaagttcagcaagatgcagggccagcgcctcgacgcgatgggcgcgggcggcgaactg
tcggcagcggacgaacgcaagtatcagaagctgcgcgaggaactcaccgcagaggtcgag
agcgtccagttccacaatgcgaagatcgaatatctcgtcgatcagctctatgcctataac
cgtcgtctgaccgcgcttggcggccagatgctgcgccttgccgagcgccacaaggtgccg
cgcaaggacttcctcgatcgctatatcggccacgaactggacgagcagtggatcccgaac
ctcggcaagctcgacaagaaatgggcggcattcgtcgcggcggaaaccgattccgtcgac
cgcatccgcatggagatttccgaaatctcccagcagaccggcatggcgctcccggaattc
cgccgcatcgtcaacatggtccagaagggcgagcgcgaggcgcgtatcgccaagaaggaa
atggtcgaggcgaacctccgtctcgtcatctcgattgccaagaaatacaccaatcgcggg
ctgcagttcctggatctcattcaggagggcaatatcggcctgatgaaggcggtcgataag
ttcgaatatcgccgcggctacaagttcagtacctatgcgacatggtggatccgtcaggcg
atcacgcgctcgatcgcggatcaggcgcgcacgatccgtatcccggtccatatgatcgag
acgatcaacaagctcgtccgcaccagccgccagttcctgcacgaacagggccgcgaaccg
actccggaggaaatggcagagcgcctgtccatgccgctggaaaaggtccgcaaggtgatg
aagatcgccaaggagccgatcagcctcgaaacgccgatcggcgacgaggaagacagccat
ctgggcgacttcatcgaggacaagaacgcgatcatcccggtcgatgccgcgatccaggcg
aacctcaaggaaaccgtcacgcgcgtgctggcgtcgctcaccccgcgtgaggaacgcgtg
ctgcgcatgcgcttcggcatcggcatgaacaccgatcacacgctggaggaagtcggccag
cagttcagcgtgacccgcgaacgcatccgccagatcgaggcaaaagcgctccgcaagctc
aagcatccgagccgctcgcgcaagatgcgcagcttcctcgaccagtaa
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integrated database retrieval system
