Sphingomonas aliaeris: H5J25_08965
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Entry
H5J25_08965 CDS
T07559
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sari
Sphingomonas aliaeris
Pathway
sari03030
DNA replication
sari03430
Mismatch repair
sari03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sari00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H5J25_08965 (dnaE)
03430 Mismatch repair
H5J25_08965 (dnaE)
03440 Homologous recombination
H5J25_08965 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sari03032
]
H5J25_08965 (dnaE)
03400 DNA repair and recombination proteins [BR:
sari03400
]
H5J25_08965 (dnaE)
Enzymes [BR:
sari01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
H5J25_08965 (dnaE)
DNA replication proteins [BR:
sari03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
H5J25_08965 (dnaE)
DNA repair and recombination proteins [BR:
sari03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
H5J25_08965 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DUF655
HHH_3
COE1_HLH
Scaffold
Motif
Other DBs
NCBI-ProteinID:
QQV78701
UniProt:
A0A974S5R8
LinkDB
All DBs
Position
1894714..1898193
Genome browser
AA seq
1159 aa
AA seq
DB search
MSHSAFVPLRIFSSYTMLDGAMEPKAIAKRAQELGFPAAALTDRNGLYAAMAYSDGCKGA
GVQPIIGTMLGIARPDMPEGMEPPLDWIALYAQDETGYENLCALVSHAHLGRPVEQSPHV
DFEALAKHADGLIALTAGREGGLTRLLAEGQADRASLYADRLQALFPDRLYIELTRRLDE
IEGRAEGPLLDMAYARGLPLVATNPCCFADEDFSAAHDAMLCIANSTYIATEDRPRSSPD
AWMKPAKEMRALFADLPEAIANTLVVAQRCAVSAPYRKPILPSLAGDRDAEAAALRRDAH
AGLTERLKKGLAPDTTEDDYRKRLDFELDVIVSMGFPGYFLIVADFIKWAKDHDIPVGPG
RGSGAGSVVAWSLTITDLDPMKLGLLFERFLNPERVSMPDFDIDFCETRREEVIRYVQQK
YGSDHVAQIITFGRLKARAVLKDTGRVLQMSYGQVDRLAKLIPNHPTDPWTLERTMNGVG
EFANEYKADSNVRHLVDLAMKLEGLPRHSSTHAAGVVIGDRPLAQLVPLYRDPRSDMPVT
QFDMKYVEGAGLVKFDFLGLKTLSVLKKAVQLLAKRGITLDLDSLEWTDEATFKLIQSGN
TVGVFQIESEGMRRTLTAVRPTVFEDIIALNALYRPGPMDNIPMFGRRKNGNETIEYPHP
LLEGILKETYGIFVYQEQVMQAAQILAGYSLGGADLLRRAMGKKIKAEMDAQRATFVEGC
ANAHGITPAKANELFDLIDKFAGYGFNKSHSAAYALLTYQTAYLKAHYPHEFFAASMCYD
LHLTDKLAIFADDMRRMGVTCVAPCVNASEAEFSVEETDDGLVVRYALAALKGVGEGAME
KLVVERDQNGPFASIDDFAHRVDPRLLNKRQLEGLAGAGAFDGMNANRAGIFAVAETLLA
TAARTQEAKVSGQGGLFGGEDAKEPAIKLPLSARWTLAQRMEQEKEAFGFYFSAHPVDRH
AHLAKAHGVRQYAALAELQIPDDGTRAGATMAALVEDARWRTSARGKRYMMATLSDPSGQ
FFATCFDDVVAGDLEEAARVGGCGVITVELDRRPGEDTPRVSIKRIQPFEQLASTARFNI
VADVGSEHAMRQLWEIISEHRGARGEVWINAALPDGGAARILLGRDFLLDGELAGRIEGI
ADITNVELKTSETRLALVG
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcattccgccttcgttccgcttcgtatcttctcctcctacacgatgctcgacggc
gcgatggaaccgaaggcgatcgccaagcgcgcgcaggaactaggtttccccgccgccgcg
ctgacggatcgcaacggcctgtatgcggcaatggcctattcggatggttgcaagggcgca
ggcgtgcagccgatcatcggaacgatgctgggaatcgcccggcccgacatgcccgagggg
atggagccgccgctcgactggatcgcgctctatgcgcaggacgagacgggctatgaaaac
ctctgcgcactggtcagccacgcgcatctcggtcgtccggtcgaacaatctccgcatgtc
gatttcgaggcgctggcaaagcatgcggacgggctgatcgcgctgaccgccggacgggag
ggcgggctgacccgtctgctcgcggaagggcaggcggaccgcgcatcgctctatgccgac
cgattgcaggcgctgttccccgatcgcctgtatatcgaactcacccgccggctggacgag
atcgaggggcgggccgaggggccgttgctcgacatggcctatgcccgcggcctgccgctg
gtcgcgaccaacccgtgctgcttcgccgatgaggatttcagcgcggcccacgacgccatg
ctgtgcatcgccaattccacctatattgcgacggaggatcgcccgcgttcctcgcctgat
gcgtggatgaagcccgcaaaggaaatgcgcgcgctgttcgccgatctgccggaagcgatc
gccaacacgctcgtcgtcgcgcaacgctgcgccgtgtccgcgccgtatcgcaagccgatc
ctgccgagccttgcgggcgatcgcgatgccgaagcggcagccttgcggcgcgatgcgcat
gccggactgaccgagcggctgaagaaggggctcgcccccgacacgaccgaggacgattac
cgcaagcggctcgatttcgaactcgacgtcatcgtctcgatgggattccccggctacttc
ctgatcgtcgcggacttcatcaaatgggcgaaggatcacgacattccggtcggtccgggc
cgtggttcgggcgcgggctcggtcgtcgcctggtcgctgacgatcaccgatctcgacccc
atgaaactggggctgctgttcgaacgcttcctcaaccccgaacgcgtgtcgatgccggat
ttcgacatcgatttctgcgaaacgcggcgcgaggaagtgatccgctacgtccagcagaaa
tatggcagcgatcacgtcgcgcagatcatcaccttcggtcgcctgaaggcacgtgcggtg
ttgaaggacaccggccgcgtgctgcagatgagctatggccaggtcgatcgcctggccaag
ctgatcccgaaccacccgaccgacccctggacgctcgagcggacgatgaacggcgtcggc
gagttcgcgaacgaatataaggccgacagcaacgtcaggcatctggtcgatctggcgatg
aagctggagggcctgccgcgccattcatcgacgcacgcggcgggcgtcgtgatcggcgat
cgaccgctggcgcagctggtcccgctctaccgcgatccgcggtcggacatgcccgtcacg
cagttcgatatgaaatatgtcgagggcgccggactggtgaagttcgactttctcggcctg
aagacgctgtcggtgttgaagaaggccgttcagttgctggcgaagcgcggcatcacgctg
gatctcgattcgctcgaatggaccgacgaagcgacgttcaagcttatccagagcggcaac
accgtcggcgtgttccaaatcgaatcggaaggcatgcgccgcacgctgactgccgtccga
ccgaccgtcttcgaggacatcatcgcgctcaacgcgctgtatcggccgggcccgatggac
aacatcccgatgttcggccggcgcaagaacggcaacgaaacgatcgaatatccgcatccg
ttgctggaaggcatcctgaaggagacttacgggatcttcgtctatcaggaacaggtcatg
caggcggcgcagatcctcgccggctacagcctgggcggtgccgatcttctgcggcgcgcg
atgggcaagaagatcaaggcggagatggacgcccagcgcgcgaccttcgtcgagggctgc
gccaatgcgcacggcatcacgccggcaaaggccaacgaactgttcgacttgatcgacaag
ttcgccggatacggcttcaacaaaagccactcggccgcctatgcattgctgacgtatcag
accgcgtatctgaaggcgcattatccgcacgaattcttcgcggcatcgatgtgctacgat
ctgcacctgacggacaagctggcgatcttcgctgacgacatgcgtcggatgggcgtcacc
tgcgtcgccccttgcgtgaatgccagcgaggcggaattctcggtcgaggaaaccgatgac
ggtctcgtcgtccgctacgcactcgcggcgctgaagggtgtcggtgagggcgcgatggaa
aagctggtcgtggagcgcgatcagaacggaccgttcgccagcatcgacgatttcgcgcac
cgcgtcgatccgcgcctgctcaacaagcgccagctggaaggattggcgggtgccggcgca
ttcgacggcatgaacgccaaccgcgcagggatcttcgcggtggccgaaaccctgctcgcc
accgccgcgcgaacgcaggaggcgaaggtcagcgggcagggggggctgttcgggggcgag
gatgccaaggaacccgcgatcaagctgccgctctcggcgcgctggacgctggcgcagcgc
atggagcaggagaaggaggcgttcggcttctatttctccgcgcatccggtcgatcgccac
gcgcatctcgccaaggcacatggcgtgcgccaatatgccgcgctcgccgagctgcagatc
cccgatgacggcacgcgcgccggtgctacgatggcggcgttggtcgaggatgcccgctgg
cgtacttccgcacgcggcaagaggtacatgatggcgaccctgtctgatccctcgggccag
ttcttcgcgacgtgtttcgacgatgtcgtcgccggcgatctggaagaggcagcccgtgtc
ggcgggtgcggcgtcatcacggtggaactcgatcgccgtccgggcgaggatacgccgcgc
gtgtcgatcaagcgaatccagccgttcgaacaactggccagcaccgcccggttcaacatc
gtcgcggatgtcggatcggaacatgcgatgcggcaattgtgggaaatcatctcggaacat
cgcggtgcgcgcggtgaagtctggatcaatgccgccttgccggacggcggcgcggcgcgc
atcctgctcggacgcgacttcctgctcgacggcgaactcgccggccggatcgaagggatc
gcggacatcaccaacgttgagttgaagacgtccgaaacgcggctcgcactggtcggctga
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integrated database retrieval system
