Sphingomonas aliaeris: H5J25_12730
Help
Entry
H5J25_12730 CDS
T07559
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sari
Sphingomonas aliaeris
Pathway
sari03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sari00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
H5J25_12730 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sari03021
]
H5J25_12730 (rpoC)
03400 DNA repair and recombination proteins [BR:
sari03400
]
H5J25_12730 (rpoC)
Enzymes [BR:
sari01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
H5J25_12730 (rpoC)
Transcription machinery [BR:
sari03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
H5J25_12730 (rpoC)
DNA repair and recombination proteins [BR:
sari03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
H5J25_12730 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Peptidase_M23
FakA-like_C
Motif
Other DBs
NCBI-ProteinID:
QQV76347
UniProt:
A0A974S3A5
LinkDB
All DBs
Position
2701284..2705570
Genome browser
AA seq
1428 aa
AA seq
DB search
MNELTNFANPVAKPETFDQIQIGIASPDKIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYKGIVCEKCGVEVTVSKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFEAYIVIEPGITPLEKYQLMTEDELLDAQDEYGEDAFTAG
IGAEAVRIMLQDLDLEGERKELLEELAVTKSELKPKKIIKRLKVVESFIDSGNRPEWMIL
EVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QEAVDALFDNGRRGRTITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYLSMLKEGEPGEGMMISDMQEVHHALEA
GAVTLHTKIISRVPQTDEAGKPYLKRYETTPGRMLLGECLPQSSKVPFDTVNRLLTKKDV
GDVIDEVYRHTGQKETVLFADAIMALGFKHAFKAGISFGKDDMIIPDAKIGLVDETKALV
KDFEQQYQDGLITQQEKYNKVIDAWSRCGDQVANAMMDEIKSVKKYTDGPNEGREKPINS
IYMMAHSGARGSQAQIKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARK
GLADTALKTANSGYLTRRLVDVSQDCVIIELDCGTERALEMRAIVQGGSTIASLGERILG
RTTAEDIIDPKTNAVVIPKGTLLDEPMILQIEALGTQSCKIRSPLVCETKIGVCGKCYGR
DLARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNETSNLEAVADGTMEYRD
LRVIVDQRGRRVVLSRSGEVAIVDMDGRERAVHRIPYGAYVLFDDGHIVSKGDRMAEWDP
FTMPVITENPGIVKYVDLIEGKTLTEQADEATGISQRVVTENRGVASKKEDLRPRLTLTG
DSAEEAGRYMLVAGATLSVEDGATVQGGDVLARVSRESAKTRDITGGLPRVAELFEARKP
KENAIIAKVSGRVVFGKDYKAKRKIGIQPEDGGEVVEYLVPKSKVIDVQEGDYVKRGDNL
IGGSPDPHDILEVLGIEPLAEYLVSEIQEVYRLQGVKINDKHIETIVRQMLQKVEITDGG
DTTLLAGEQVDRAEMDEINEKLEKKQVRAQGKPVLLGITKASLQTRSFISAASFQETTRV
LTEASVQGKKDTLTGLKENVIVGRLIPAGTGAGMGRMRIAASSRDAAMRVSQRKMAEVSI
AMANSAAEERAAEKLRNVADDTGDDALGAVTTSGTGTDADAGDYLIKE
NT seq
4287 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaactgaccaacttcgccaatccggtcgccaagccggaaacgttcgaccagatc
cagatcggcatcgcgtccccggacaagatccgttcgtggtcgttcggcgagatcaagaag
ccggaaaccatcaactatcgcacgttcaagcccgagcgtgacggcctgttctgcgcgcgc
atcttcggtccgatcaaggattacgaatgcctgtgcggcaagtacaagcgcatgaagtac
aagggcatcgtctgcgaaaagtgcggcgtggaagtcaccgtgtcgaaggtccgccgcgag
cgtatgggccatatcgagctggccgcgccggtcgcgcacatctggttcctgaagtcgctg
ccgtcgcgcattggcctgctgctcgacatgcagttgaagcagctggaacgcgtgctgtat
ttcgaggcgtatatcgtgatcgagccgggcatcaccccgctcgaaaagtaccagctgatg
accgaggacgaactcctcgacgcgcaggacgaatatggtgaggacgccttcaccgccggg
atcggcgcggaagccgtgcgcatcatgctgcaggacctcgatctggagggcgagcgcaag
gagctgctggaagaactggcggtcaccaagtccgagctgaagcccaagaagatcatcaag
cgcctgaaggtcgtggaaagcttcatcgattccggcaaccgcccggaatggatgatcctg
gaagtcgtgccggtcatcccgccggaactgcgtccgctggtgccgctggatggcggccgc
ttcgcgacgtcggacctgaacgatctgtatcgccgcgtgatcaaccgcaacaaccgcctg
aagcgcctgatggagctgcgtgcgccggacatcatcgtccgcaacgaaaagcgcatgttg
caggaagcggtcgatgcgctgttcgacaacggccgtcgcggtcgcacgatcacgggtgcc
aacaagcgtccgctgaagtcgctgtccgacatgctgaagggcaagcagggccgcttccgc
cagaaccttctcggcaagcgcgtcgattattcgggccgttcggtcatcgtgaccggtccg
gaactgaagctgcaccagtgcggcctgccgaagaagatggcgctcgagctgttcaagccg
ttcatctacgcgcgcctcgacgccaagggcctgagcatgacgctcaagcaggcgaagaag
tgggtcgagaaggagcgcaaggaagtctgggacatcctggacgaggtgatccgcgagcat
cccgtgatgctgaaccgcgcccctaccctgcaccgtctgggcatccaggcgttcgaaccg
gttctgatcgaaggcaaggcgatccagcttcacccgctggtctgctcggcgttcaacgcc
gatttcgacggcgaccagatggccgtgcacgtcccgctgagcctcgaggcccagttggaa
gcgcgcgtcctgatgatgtcgaccaacaacatcctgtcgccggcgaacggcaagccgatc
atcgtgccgtcgcaggacatggtgctgggcctgtattacctgtcgatgctgaaggaaggc
gagccgggcgaaggcatgatgatctccgacatgcaggaggttcatcacgcactggaagcc
ggcgcggtcacgctgcacaccaagatcatcagccgcgtgccgcagaccgacgaggcgggc
aagccctacctcaagcgctatgagaccacccccggtcgcatgctgctcggcgagtgcctg
ccgcagtcgtcgaaggttccgttcgacaccgtcaaccgcctgctgaccaagaaggacgtg
ggcgacgtgatcgacgaggtctatcgtcacaccggccagaaggagaccgtgctgttcgcc
gacgcgatcatggcgctcggcttcaagcacgcgttcaaggcgggcatctcgttcggcaag
gacgacatgatcatcccggacgcgaagatcggtctggtcgacgagaccaaggcgctcgtg
aaggacttcgagcagcagtatcaggacggcctgatcacgcagcaggagaagtacaacaag
gtgatcgacgcctggagccgttgcggcgaccaggtggcgaacgcgatgatggacgagatc
aagtcggtcaagaagtacaccgatggcccgaacgaaggccgcgagaagccgatcaactcg
atctacatgatggcgcattccggtgcgcgtggttcgcaggcgcagatcaagcagcttgcc
ggcatgcgcggcctgatggccaagccgtcgggcgagatcatcgaaacgccgatcatctcg
aacttcaaggaaggcctgaccgtcctcgaatacttcaactccacccacggtgcccgtaag
ggtctggcggatacggctttgaagacggcgaactcgggctacctgacccgccgtctggtc
gacgtgtcgcaggattgcgtcatcatcgaattggattgcggtacggaacgggcgctggaa
atgcgcgcgatcgttcagggcggttccaccatcgcctcgctcggcgagcgtatcctgggc
cgcaccacggccgaggacatcatcgatccgaagaccaatgcggtcgtcattccgaagggc
acgttgctcgacgaaccgatgatcctgcagatcgaggcgctgggtacccagtcgtgcaag
atccgcagcccgctggtctgcgaaacgaagatcggcgtatgcggcaagtgctacgggcgc
gatctcgcccgcggtacgccggtgaacatcggcgaggctgtcggcgtcatcgccgcacag
tcgatcggcgagccgggcacgcagctgacgatgcgtacgttccacatcggtggcgcggca
cagctgaacgaaacgtccaacctggaagcggtcgccgacggcacgatggaatatcgtgac
ctgcgcgtgatcgtcgaccagcgcggccgtcgcgtcgtgctgagccgttcgggcgaagtg
gcgatcgtggacatggacggccgcgagcgcgcggtgcaccgtatcccgtacggcgcatac
gtgctgttcgacgacggtcacatcgtcagcaagggcgaccggatggccgaatgggatccg
ttcaccatgccggtgatcacggaaaacccgggcatcgtgaagtatgtcgatctgatcgag
ggcaagacgctcaccgaacaggccgacgaagcgaccggtatctcgcagcgtgtcgtgacc
gaaaaccgcggcgtcgccagcaagaaggaagatctccgtccgcgcctgaccctgaccggg
gacagtgcggaagaggccggccggtacatgctggtagcgggtgcgaccctgtcggtcgag
gatggtgccacggttcagggcggtgacgttctggcccgtgtcagccgcgaaagcgccaag
acgcgcgacatcacgggcggtctgccgcgtgttgccgagctgttcgaagcgcgcaagccg
aaggagaatgcgatcatcgcaaaggtctccggccgcgtcgtgttcggcaaggattacaag
gccaagcgcaagatcggtatccagcccgaggatggcggcgaggtcgtggaatatctggtg
ccgaagtcgaaggtcatcgacgtgcaggaaggcgattacgtcaagcgcggcgacaacctg
atcggtggttcgccggatccgcacgacattctggaagtgctcggcatcgagccgctggcc
gaatatctggtcagcgaaatccaggaagtgtaccggttgcagggcgtgaagatcaacgac
aagcacatcgagacgatcgttcgtcagatgctgcagaaggtcgagatcaccgacggtggc
gacaccaccttgctggccggcgagcaggtcgatcgtgcagaaatggacgagatcaacgag
aagctcgagaagaagcaggtccgtgcacagggcaagcccgtcctgctcggcattaccaag
gcgtcgctgcagacccgcagcttcatctcggcggcgtcgttccaggagaccacccgcgtc
ctcaccgaagcatcggtgcagggcaagaaggacacgctgaccggtctcaaggagaacgtg
atcgtgggtcgcctgatccccgccggtaccggcgcgggcatgggccgcatgcgcatcgcc
gcctccagccgcgacgccgccatgcgcgtgtcgcagcgcaagatggccgaagtgtcgatc
gccatggccaattcggccgccgaagaacgcgccgccgaaaagctgcgcaacgtcgcggac
gatacgggtgacgacgcactgggcgctgtgacgaccagcggcaccggcaccgacgccgat
gcgggcgattacctgatcaaggagtga
DBGET
integrated database retrieval system
