Sphingomonas aliaeris: H5J25_16730
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Entry
H5J25_16730 CDS
T07559
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
sari
Sphingomonas aliaeris
Brite
KEGG Orthology (KO) [BR:
sari00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sari03032
]
H5J25_16730 (topA)
03400 DNA repair and recombination proteins [BR:
sari03400
]
H5J25_16730 (topA)
Enzymes [BR:
sari01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
H5J25_16730 (topA)
DNA replication proteins [BR:
sari03032
]
Prokaryotic type
DNA Topoisomerases
H5J25_16730 (topA)
DNA repair and recombination proteins [BR:
sari03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
H5J25_16730 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
QQV76991
UniProt:
A0A974S3Z8
LinkDB
All DBs
Position
complement(3541187..3543817)
Genome browser
AA seq
876 aa
AA seq
DB search
MQLVIVESPAKAKTIEKYLGSDYRVLASYGHVRDLPPKDGSVNPDEGFAMEWENYADKSK
QLKAITDLAKTADRLILATDPDREGEAISWHVREVLRARKALPKEVERVTFNAITKATVT
AAMKAPRELDDDLIDAYRARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVALRLIVSRE
REIEAFRAQEYWSVTADMEQDGTPFQARLVTFEGKKLDRLSIGEEGTAMRAKAAVEEGRF
AVQSVETKPAMRNPPAPFTTSTLQQEASRKLGFSADHTMRIAQGLYEDGAITYMRTDGVQ
MDSSAISAARLAVANRYDASYVPDKPRQYTSKAKNAQEAHEAIRPTDFAKDKVGGGDHAR
LYDLIWKRALASQMASARMERTTVELLDGSGQTGLRATGQVVLFPGYLALYEEGSDDSEG
EDAKRLPRLREGDAPAKKAVNAEQHFTQPPPRFSEASLVKRMEELGIGRPSTYASIIKTL
KDRAYVRVEKNRFFAEESGRLVTAFLERFFEKYVGYDYTAGLEDELDEVSGGRAEWQAVL
AAFWQDFKPRTTEVMEQKPSEVTAELDIFLEPYLFPAQADGGDARLCPNCGQGRLALRGG
KFGAFVACSNYPECKYTRRFGQGGGEDGADSGPETLGNDPETGLPVERKSGRFGPYIQLG
EGKEAKRASIPKDLPGELDLEWALKLLGLPRTVGTHPESGEPITASIGRYGPYLAHAGKY
ARLQSTMDVFETGMNAAVVKLAEAAAGGGRPQRGAQAPLKVLGLHPRTEAEIKLMEGRYG
AYVTDGETNATLPKSIEKDALTLEEAAQLIDARAAAAPAKKGKKKAPAKKATAKKPAAAK
AAAVDGAKPAAKKAPAKKTAAKKAPVKKKAVVETEA
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgcagctcgtcatcgtcgaatcgcccgccaaggcgaaaaccatcgaaaagtatctgggc
agcgattatcgcgtcctcgcctcgtacggccatgtccgcgatctgccgccgaaggacggt
tcggtgaatccggacgagggcttcgcgatggagtgggagaattacgcagacaagtcgaag
cagctgaaggcgatcaccgatctcgccaagactgccgaccgactgatcctggcgaccgat
ccggatcgcgagggcgaagcgatttcctggcacgtgcgcgaagtgctgcgcgcgcggaag
gcattgccgaaggaggtcgagcgggtgaccttcaacgcaatcaccaaggcgacggtgacg
gcggcgatgaaggcgccgcgcgaactggacgacgacctgatcgacgcataccgggcgcgc
cgcgcgctggactatctggtcggcttcacgctgtcgccggtcctgtggcgcaagctgccg
ggggcgaaatcggccgggcgcgtgcagtcggtcgccttgcgcctgatcgtcagccgcgaa
cgcgaaatcgaggcgttccgggcgcaggaatattggtcggtcaccgccgacatggagcag
gacggcacgccgttccaggcgcggctcgtcacgttcgagggcaagaagctggatcgcctg
tcgatcggcgaggaaggtaccgcgatgcgcgcgaaggcggcggtcgaggagggacggttc
gcggtccagtcggtcgagacgaagcccgcgatgcgcaacccgcccgcgccgttcacgaca
tcgacgttgcagcaggaggcgtcgcgcaagctgggcttctccgccgaccacacgatgcgg
atcgcgcaaggcctgtatgaggacggcgcgatcacctacatgcgtaccgacggcgtgcag
atggattccagcgcgatctcggccgcacgtctggccgtcgcgaaccgctatgacgcgagc
tatgtgcccgacaagccacggcaatatacgtctaaggcgaagaacgcgcaggaagcgcat
gaggcgatccgaccgaccgatttcgccaaggacaaggtgggcggcggggatcatgcgcgg
ctgtacgacctgatctggaagcgtgcgctggcgagccagatggcgagcgcgcggatggaa
cgcacgacggtcgagctgctcgatggcagcggccagaccggtttgcgcgcgaccgggcag
gtggttctgttcccgggctatctcgccttgtacgaggaaggatcggacgacagcgagggc
gaggatgcgaagcgcctgccgcgactgcgcgagggcgatgcgccggctaagaaggcggtg
aatgcggaacagcatttcacgcagccgccgccgcgcttttcggaagcgtcgctggtcaag
cggatggaggaactcgggatcgggcgcccatcgacctatgcctcgatcatcaagacgctg
aaggaccgcgcgtacgtccgcgtcgagaagaaccgcttcttcgcggaggagagcgggcgg
ctggtgacggcgttcctcgaacggttcttcgagaaatatgtcggctacgattataccgcc
ggcctcgaggacgaactggacgaagtgtccggcgggcgtgcggaatggcaggcggtgctc
gcggcgttctggcaggacttcaagccgcgtacgaccgaggtgatggagcagaagccgtcc
gaagtgacggcggaactcgatatcttcctggagccgtatctgttcccggcgcaggccgat
ggcggcgatgcgcggctatgcccgaattgcgggcaggggcggcttgcgctgcgtggcgga
aagttcggcgcgttcgtcgcatgttcgaactatccggagtgcaaatatacgcggcgcttc
ggtcagggcggtggtgaagatggcgcggatagcgggccggagacgctgggcaacgatccc
gagaccggtttgccggtggagcgcaagtcggggcggttcggtccgtatatccagcttggc
gagggcaaggaagcgaagcgcgcgtcgatcccgaaggatttgccaggcgaactggacctg
gaatgggcgctgaagctgttgggcctgccgcgcaccgtcgggacgcatcccgagagtggc
gagccgatcaccgcgtcgatcggacgctatgggccgtatctggcgcatgcggggaagtat
gcgcggctgcaatcgacgatggacgtgttcgaaacgggcatgaacgctgcggtggtcaag
ttggccgaggcggcggcgggcggcggccgtccgcagcgcggcgcgcaggcgccgctcaag
gtactcggcctgcatccgcgtaccgaagcggagatcaagctgatggaggggcgttacggc
gcgtatgtgacggacggcgagaccaatgcgaccttgcccaaatcgatcgagaaggacgcg
ctgacgctggaagaagccgcgcaattgatcgacgctcgtgcggcggcggcaccggcgaag
aagggcaagaagaaggccccggcgaagaaggcgactgcgaagaaaccggcggctgcgaag
gcagcggcggtggacggcgcgaagcctgctgccaagaaggcgccggccaagaagactgcg
gcgaagaaggcgccggtcaagaagaaggcggtggtcgaaacggaggcgtaa
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